Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 7e-18
seq4 93.3 5e-14
>seq8
Length=2477967
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| | | ||||| || | || | ||||||||||| || || ||||| || |
Sbjct 2273375 ACCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 2273316
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || |||||||| || ||||| || | ||||| ||||||| ||
Sbjct 2273315 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGG 2273256
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||||||| ||| || |||| | | | |||||| || |||||
Sbjct 2273255 GATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 2273196
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||| || |||||||| || ||||| || ||||| |||||
Sbjct 2273195 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148
>seq4
Length=3212107
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || ||||| || | || || || |||| || || ||||| ||
Sbjct 2383102 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2383043
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
|| || || | ||||| ||||| | || | || |||||||||| ||| || ||
Sbjct 2383042 GCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2382983
Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| ||| | | | |||||| || || || |||| |||||||| ||||| || || ||
Sbjct 2382982 A-CGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGT 2382924
Query 42191 CTTTACAAAGATTTGCAT 42208
||| || ||||| |||||
Sbjct 2382923 CTTCACGAAGATCTGCAT 2382906
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||||||||| ||||| || | || || || | || || |||||||||||||||||
Sbjct 2383389 TCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAG 2383330
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | |||||| ||||| | || | || |||||||| | ||| | || | |||| |
Sbjct 2383329 ATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATT 2383271
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| ||| || || || | || ||||| ||||| || || ||||| ||
Sbjct 2383270 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| |||||| || ||| || || || ||||| ||| |||||| || | || ||
Sbjct 2383635 ACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCC 2383576
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||| || || || || | ||| || ||||| | || | | |||||||||| ||
Sbjct 2383575 AACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCC-TG 2383517
Query 42120 ATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
| | || | |||| ||| | || || || || || || || | ||||||||| |
Sbjct 2383516 AATCTTGCTCTTGA-CGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCT 2383458
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || | ||||| ||||||||||||||
Sbjct 2383457 TTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212589505040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |