Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 210 2e-49 >seq2 Length=5746313 Score = 210 bits (232), Expect = 2e-49 Identities = 1066/1674 (64%), Gaps = 44/1674 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| ||||| || || ||||| ||| | ||||| Sbjct 596046 AACTACCAATACTTCGGCTTCAAGACTTTGGAGCGATCATATCTCCTGAAGCTTAATGGC 596105 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||| |||| || || || | ||||| || || | || || || || Sbjct 596106 AAGATTGTGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGAC 596165 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| || ||| | | ||| || |||| |||| | || ||| Sbjct 596166 GACATCGAGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAGTACTTCACACACGCC 596225 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || || ||||||||||| || || || | | ||| |||| || || ||||| | Sbjct 596226 TCTCCTACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTC 596285 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || |||| |||| ||||||| || || | || Sbjct 596286 GAC-ATGAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCGCCATGAT 596344 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || || || || ||||| ||| ||||| |||| ||||| | || || Sbjct 596345 CTCCAAGATGGCCGGTGGTATCGGTCTCAACATCCAC--CGTATTCGTGCGACCGGCTCT 596402 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || ||| ||||||||| || || ||||| || | || || ||||| || || |||||| Sbjct 596403 TATATCGCCGGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAAC 596462 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || ||||| ||||| ||||| | | | ||| | || || ||||| Sbjct 596463 AACACTGCTCGATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTAT 596522 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 ||||||||||||||| | || || | ||| | || || ||||||||||| || || Sbjct 596523 CTCGAGCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAA 596582 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | || | || || ||| || |||||| | || || || || |||||| Sbjct 596583 GAAGAGGTCCGCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAA 596642 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||||| ||| | |||| ||| | || |||||||| || || || ||| || Sbjct 596643 CGTGTTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCC 596702 Query 94372 GACGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGC--AA 94427 || |||| | ||| | | || || | | | || | ||||| | ||||| | Sbjct 596703 GATGTTTACGGCGAT-GAG-TTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAG 596760 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 | | | || | || | || |||||| ||| || || |||| | ||| || Sbjct 596761 GTCGACAAAAG--ATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGA 596818 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||| |||| || | ||| | | ||||||| || |||| |||| ||||| || | Sbjct 596819 GACTGGTAACCCTTTCATGCTCTACAAGGACCATGCCAACCGCAAGAGTAACCAAAAGAA 596878 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || ||| ||||| ||||| ||||||||||| | || || | | || || Sbjct 596879 CCTGGGCACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGA 596938 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || || || || ||| ||| | ||| || | ||||| ||| ||| Sbjct 596939 TGAGGTCGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGT-CGA-----CTA 596992 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT 94727 || | | || || | || | || |||| || || || | | || Sbjct 596993 CA--ACCAGGGCGTC-TATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCG 597049 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 |||||||||| | | || || |||| |||||| || | |||||| ||| || Sbjct 597050 CAACCTGAACAAGATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAA 597109 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || ||||||||| |||| ||||| ||| | || || || | | | Sbjct 597110 CATGCGACACCGTCCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTCTAGCCCT 597169 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGC--GGCGGGTTTGAATTTGAACATATTCGAAAGC 94905 || |||| | ||| ||| ||| || ||| | | || | | || ||||| | | Sbjct 597170 CCGCATGCCTTTCGAGTCTCCCGAGGCTAGGCAG--CTCAACAAGCAGATCTTCGAGACC 597227 Query 94906 ATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACAC 94965 ||||| | || ||| ||| | ||| | | | |||| ||| || || || Sbjct 597228 ATTTACCATGGTGCCTTGACAGCTTCCATGGAGATCGCCA---AGGAGCAAGGACCCTAC 597284 Query 94966 GAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | | | || || || | ||||| || | || | |||| | ||| || Sbjct 597285 TCCACCTACGAGGGCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGTGGAACGTC 597344 Query 95026 AAGCCCTCGGGTCTGTACGACTGGGA-AG-CTCTACGCGCTGATGTTATCAAACACGGTG 95083 | || || | || | |||||||| || ||| | | || ||| | || | | |||| Sbjct 597345 ACCCCATCTGACCTTTGGGACTGGGAGAGCCTCAAAGAGCAGAT-CAAGCAGA-ATGGTG 597402 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| ||| | |||| || |||||||| ||| || | |||||||| |||| Sbjct 597403 TCCGCAACAGTCTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCA 597462 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 ||||||||| ||||| |||| || |||||| | ||| | || || || || || | Sbjct 597463 ACAACGAGTGTTTCGAGCCCTATACATCCAACATCTACTCTCGTCGTGTCCTAGCTGGCG 597522 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGT 95262 | |||| || ||||| || || |||||| | || | ||||| ||||| Sbjct 597523 AGTTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTCGTCGAC-ATGGGTCTGTGGTCC 597581 Query 95263 GACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318 ||||| | ||||| | | |||| | | || ||| |||||||||| || | Sbjct 597582 GACAACATGAAGAATCGTATCATTGCTGAGGG----TGGTTCCATCCAGAACATTCCCAA 597637 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || |||| ||| |||||||| || ||||||||||||||||||||| | ||||| Sbjct 597638 CATTCCGGCGGAGATCAAGGCCCTGTACAAGACCGTGTGGGAGATCTCTCAGCG 597691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723008294760