Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
seq4 113 4e-20
seq3 96.9 3e-15
seq8 95.1 1e-14
>seq2
Length=5746313
Score = 120 bits (132), Expect = 3e-22
Identities = 298/450 (66%), Gaps = 23/450 (5%)
Strand=Plus/Plus
Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457
||| |||| |||||||| |||||||| | || || ||| ||| ||| |||||
Sbjct 3731248 CGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 3731307
Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517
|| | | || | | || | ||||| |||||||| ||| |||||||||||| |||
Sbjct 3731308 TTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCG 3731367
Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCC------TCTACTAC---AAGACGCGC 52568
|| ||||| || || ||||| |||||||| |||| ||| | || |||| |||
Sbjct 3731368 CGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGC 3731427
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628
|| | || ||| | | ||| || || ||| || || || |||||
Sbjct 3731428 ----CCCAGCAA--------GGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATT 3731475
Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688
|| | ||||| || || | || || || || |||||||| |||||| | | |
Sbjct 3731476 GAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTC 3731535
Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AA 52747
||| | ||||| |||||||| ||||| ||||| | | ||| |||| | | ||
Sbjct 3731536 ATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGCTCTC-GGCAACGAGAA 3731594
Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807
| | | ||| ||| || || || || ||| | ||||| || || | ||||||||
Sbjct 3731595 GGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGAC 3731654
Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||| || |||||||| || ||||| ||
Sbjct 3731655 CAACTTCTTTGAGAAGCGCGTGGGCGAATA 3731684
>seq4
Length=3212107
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | || | |||| ||||| ||||||||||||||||||
Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| | || || || | | |||| ||||||||||| ||||| ||
Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||| ||||| ||| || || | | || | || || | |||||| |||
Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACC 2383702
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | ||| || || |||| || || || || ||||||||
Sbjct 2383701 TCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | ||| | | | ||||| || || ||||||||||| |||
Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| | || || |||| | |||| | || |||||||| |||||
Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | || | || | ||| || | || || | ||||| |
Sbjct 2383533 ATACCCTCCTTGTC-CTGAATCTTGCTCTTGACGTTG-TCAATAGTATCCGATGACTCAA 2383476
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | ||| | || || || |||| ||| || ||||| || |||||
Sbjct 2383475 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || ||||||||||| | || || |||||| ||||| || |||| | |
Sbjct 2383097 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 2383038
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| | |||||||||||| || || || || || ||||| ||| || || | |
Sbjct 2383037 GATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTT 2382978
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||||| ||||| ||||||| || | || || || || || || || ||
Sbjct 2382977 GTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCAC 2382918
Query 138603 AAAAATCTGCATGG 138616
|| ||||||||||
Sbjct 2382917 GAAGATCTGCATGG 2382904
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || | || | | || |||||||||||||||||||||
Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| || || ||||| | |||| | ||||||||||| || ||
Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || |||| || | |||||||| |||||| |
Sbjct 2383305 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATGGTGTCGGACGACTCGA 2383248
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|||| | || | || || ||||| || || || ||
Sbjct 2383247 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211
>seq3
Length=5106013
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| || ||||| ||||| || || || || | | |||
Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || || |||||||| ||||| || || || ||||| ||| || || | ||||
Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTG- 1582959
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||||| |||||||||||||| || | || || || || || || || ||
Sbjct 1582960 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 1583019
Query 138604 AAAATCTGCA 138613
|| |||||||
Sbjct 1583020 AAGATCTGCA 1583029
>seq8
Length=2477967
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| | || || ||||||||| || || |||| |
Sbjct 2273339 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2273280
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| | ||||||||||| || || || ||||| ||||| ||| || || | |||
Sbjct 2273279 GATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATT 2273220
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
|| | | |||||||| ||||||||||| | || | || || || || || || || |
Sbjct 2273219 GT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 2273161
Query 138602 CAAAAATCTGCATG 138615
| || |||||||||
Sbjct 2273160 CGAAGATCTGCATG 2273147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262207698320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |