Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq4 113 4e-20 seq3 96.9 3e-15 seq8 95.1 1e-14 >seq2 Length=5746313 Score = 120 bits (132), Expect = 3e-22 Identities = 298/450 (66%), Gaps = 23/450 (5%) Strand=Plus/Plus Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| |||| |||||||| |||||||| | || || ||| ||| ||| ||||| Sbjct 3731248 CGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 3731307 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | || | ||||| |||||||| ||| |||||||||||| ||| Sbjct 3731308 TTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCG 3731367 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCC------TCTACTAC---AAGACGCGC 52568 || ||||| || || ||||| |||||||| |||| ||| | || |||| ||| Sbjct 3731368 CGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGC 3731427 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628 || | || ||| | | ||| || || ||| || || || ||||| Sbjct 3731428 ----CCCAGCAA--------GGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATT 3731475 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | ||||| || || | || || || || |||||||| |||||| | | | Sbjct 3731476 GAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTC 3731535 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AA 52747 ||| | ||||| |||||||| ||||| ||||| | | ||| |||| | | || Sbjct 3731536 ATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGCTCTC-GGCAACGAGAA 3731594 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 | | | ||| ||| || || || || ||| | ||||| || || | |||||||| Sbjct 3731595 GGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGAC 3731654 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| || |||||||| || ||||| || Sbjct 3731655 CAACTTCTTTGAGAAGCGCGTGGGCGAATA 3731684 >seq4 Length=3212107 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | |||| ||||| |||||||||||||||||| Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| | || || || | | |||| ||||||||||| ||||| || Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | || || | |||||| ||| Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACC 2383702 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||| || || |||| || || || || |||||||| Sbjct 2383701 TCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | ||| | | | ||||| || || ||||||||||| ||| Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || || |||| | |||| | || |||||||| ||||| Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | || || | ||||| | Sbjct 2383533 ATACCCTCCTTGTC-CTGAATCTTGCTCTTGACGTTG-TCAATAGTATCCGATGACTCAA 2383476 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | ||| | || || || |||| ||| || ||||| || ||||| Sbjct 2383475 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| | || || |||||| ||||| || |||| | | Sbjct 2383097 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 2383038 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| | |||||||||||| || || || || || ||||| ||| || || | | Sbjct 2383037 GATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTT 2382978 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||| ||||||| || | || || || || || || || || Sbjct 2382977 GTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCAC 2382918 Query 138603 AAAAATCTGCATGG 138616 || |||||||||| Sbjct 2382917 GAAGATCTGCATGG 2382904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | || ||||||||||||||||||||| Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || ||||| | |||| | ||||||||||| || || Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | |||||||| |||||| | Sbjct 2383305 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATGGTGTCGGACGACTCGA 2383248 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| | || | || || ||||| || || || || Sbjct 2383247 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211 >seq3 Length=5106013 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| || ||||| ||||| || || || || | | ||| Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || || |||||||| ||||| || || || ||||| ||| || || | |||| Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTG- 1582959 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||||| |||||||||||||| || | || || || || || || || || Sbjct 1582960 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 1583019 Query 138604 AAAATCTGCA 138613 || ||||||| Sbjct 1583020 AAGATCTGCA 1583029 >seq8 Length=2477967 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||||||| || || |||| | Sbjct 2273339 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2273280 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||||||||| || || || ||||| ||||| ||| || || | ||| Sbjct 2273279 GATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATT 2273220 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | |||||||| ||||||||||| | || | || || || || || || || | Sbjct 2273219 GT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 2273161 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 2273160 CGAAGATCTGCATG 2273147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262207698320