Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq2 91.5 1e-13 seq3 89.7 5e-13 >seq4 Length=3212107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| ||| | || || ||| || ||||| || ||| Sbjct 2383395 GTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCA 2383336 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || |||||||||||||| || ||| |||| Sbjct 2383335 GCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTG 2383276 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || ||||| || || || Sbjct 2383275 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 2383216 Query 127097 TTTAC 127101 || || Sbjct 2383215 TTGAC 2383211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | ||||||||||| || || ||||| || | | Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| || || || |||||||||| || || || ||||| Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| || | || |||| ||| || Sbjct 2383533 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG-TCAATAGTATCCGATGACTCAAC 2383475 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| ||| || ||||| || ||||| Sbjct 2383474 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || || || ||||||| ||||| || || || || |||||||||||| Sbjct 2383060 TCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTG 2383001 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | |||| |||| ||||| | |||||| |||| || | Sbjct 2383000 TCCTGGATCTTGGACTTCACGTTG-TCGATAGTGTCGGAGGACTCGACCTCGAGAGTGAT 2382942 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || |||||||| || || || || || |||||||||| Sbjct 2382941 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGG 2382904 >seq2 Length=5746313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 335/520 (64%), Gaps = 25/520 (5%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACAT---TGAAAACGAAAACGTC 47126 || ||| | || || ||||||||||||||| | | | || ||| || || ||| Sbjct 3731179 CCTTGCATCCGAAGGAAGGCCGAGTGGGCCCTTACTTGGATCACTGACAAGGA----GTC 3731234 Query 47127 ACTCTG-GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAG 47185 | || || |||| ||| |||| ||||| |||||||| |||||||| || Sbjct 3731235 AACCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGC 3731294 Query 47186 CTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAA 47245 ||| || | || || | | || | || | ||||| ||||| || || ||| Sbjct 3731295 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAA 3731354 Query 47246 CGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAA 47302 |||| | |||||| | ||||| ||||| ||||| ||||||| || || | || | | Sbjct 3731355 CGAGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCA 3731414 Query 47303 CACT--AGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAG 47358 | || ||| ||| | | ||| | | || | | ||| | | || | Sbjct 3731415 C-CTGAAGAATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCA---------CTGATG 3731464 Query 47359 CCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGA 47418 | ||||| |||||| ||||| || | ||||| || || | | ||||||||| Sbjct 3731465 CTGTCGCTATTGAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGA 3731524 Query 47419 ACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAA 47478 || | | | |||| | ||||| || ||||| || ||||| || ||| || || Sbjct 3731525 ACTCCAACCTCATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGCTCTCG 3731584 Query 47479 AGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCG 47538 | ||| | |||| | || || || ||||| || ||| | ||||| || || | Sbjct 3731585 GCAACGAGAAGGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGG 3731644 Query 47539 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||| || ||||||||||| |||||||| Sbjct 3731645 GAGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAATA 3731684 >seq3 Length=5106013 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || || || ||| || ||||| || ||||| ||||| Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | || || || |||||||| ||||||||||||||| ||| || ||| | | ||| Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||| | ||| || |||| ||| | || ||||| || || || || || || Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022 Query 127106 ATCTGCA 127112 ||||||| Sbjct 1583023 ATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500615743440