Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 1e-14
seq2 91.5 1e-13
seq3 89.7 5e-13
>seq4
Length=3212107
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || |||||||| ||||| ||| | || || ||| || ||||| || |||
Sbjct 2383395 GTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCA 2383336
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||||||||| || || || || |||||||||||||| || ||| ||||
Sbjct 2383335 GCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTG 2383276
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| || | ||| | || ||||| || || ||
Sbjct 2383275 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 2383216
Query 127097 TTTAC 127101
|| ||
Sbjct 2383215 TTGAC 2383211
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | ||||||||||| || || ||||| || | |
Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || | ||| || || || |||||||||| || || || |||||
Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| || | || |||| ||| ||
Sbjct 2383533 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG-TCAATAGTATCCGATGACTCAAC 2383475
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || ||||||| ||| || ||||| || |||||
Sbjct 2383474 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || || || || || || ||||||| ||||| || || || || ||||||||||||
Sbjct 2383060 TCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTG 2383001
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| || ||| | |||| |||| ||||| | |||||| |||| || |
Sbjct 2383000 TCCTGGATCTTGGACTTCACGTTG-TCGATAGTGTCGGAGGACTCGACCTCGAGAGTGAT 2382942
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|| |||||||| || || || || || ||||||||||
Sbjct 2382941 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGG 2382904
>seq2
Length=5746313
Score = 91.5 bits (100), Expect = 1e-13
Identities = 335/520 (64%), Gaps = 25/520 (5%)
Strand=Plus/Plus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACAT---TGAAAACGAAAACGTC 47126
|| ||| | || || ||||||||||||||| | | | || ||| || || |||
Sbjct 3731179 CCTTGCATCCGAAGGAAGGCCGAGTGGGCCCTTACTTGGATCACTGACAAGGA----GTC 3731234
Query 47127 ACTCTG-GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAG 47185
| || || |||| ||| |||| ||||| |||||||| |||||||| ||
Sbjct 3731235 AACCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGC 3731294
Query 47186 CTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAA 47245
||| || | || || | | || | || | ||||| ||||| || || |||
Sbjct 3731295 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAA 3731354
Query 47246 CGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAA 47302
|||| | |||||| | ||||| ||||| ||||| ||||||| || || | || | |
Sbjct 3731355 CGAGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCA 3731414
Query 47303 CACT--AGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAG 47358
| || ||| ||| | | ||| | | || | | ||| | | || |
Sbjct 3731415 C-CTGAAGAATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCA---------CTGATG 3731464
Query 47359 CCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGA 47418
| ||||| |||||| ||||| || | ||||| || || | | |||||||||
Sbjct 3731465 CTGTCGCTATTGAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGA 3731524
Query 47419 ACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAA 47478
|| | | | |||| | ||||| || ||||| || ||||| || ||| || ||
Sbjct 3731525 ACTCCAACCTCATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGCTCTCG 3731584
Query 47479 AGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCG 47538
| ||| | |||| | || || || ||||| || ||| | ||||| || || |
Sbjct 3731585 GCAACGAGAAGGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGG 3731644
Query 47539 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||||||||||||| || ||||||||||| ||||||||
Sbjct 3731645 GAGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAATA 3731684
>seq3
Length=5106013
Score = 89.7 bits (98), Expect = 5e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || || || ||| || ||||| || ||||| |||||
Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| || || || |||||||| ||||||||||||||| ||| || ||| | | |||
Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||| | ||| || |||| ||| | || ||||| || || || || || ||
Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022
Query 127106 ATCTGCA 127112
|||||||
Sbjct 1583023 ATCTGCA 1583029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500615743440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |