Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 183 4e-41 >seq2 Length=5746313 Score = 183 bits (202), Expect = 4e-41 Identities = 1054/1659 (64%), Gaps = 59/1659 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| |||||||| || || |||||||| | | ||||| | Sbjct 597844 CGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTCGTG 597785 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | || ||| | | |||| || ||||| | |||||||| |||||||| Sbjct 597784 ATCTTGCCCA-TGGTGGGGTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAA 597726 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 115733 | || || || || ||||| | |||| | | || ||| |||||||| || Sbjct 597725 GGCACCACGGTCGGCAGCCATCTG---CACAACGGTTCGCTGAGAGATCTCCCACACGGT 597669 Query 115734 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 |||| ||| ||| || || | || || | || || ||||| || ||||| Sbjct 597668 CTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACC--- 597612 Query 115794 CTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850 || | |||| ||| |||||| | | ||||| ||||| || | ||| |||| Sbjct 597611 CTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTT 597552 Query 115851 CA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAG 115905 || | ||| | ||||| || ||||| || || ||| || | ||| ||| Sbjct 597551 CAGCAGCCAGGGG----TTGACCACCTGGAACTCGCCAGCTAGGACACGACG-AGAGTAG 597497 Query 115906 ATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 115965 ||||||| || || ||||| || ||||| ||||| |||| ||| || | ||| ||| Sbjct 597496 ATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCA 597437 Query 115966 GTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTG 116025 |||||||| || ||||| | || |||||||||| ||| | | | || | || ||| Sbjct 597436 GTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTG 597377 Query 116026 AGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 ||| |||||||| | | | || | | | | |||||| || | || |||| Sbjct 597376 AGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACG--TTCCACATGTCGTATTGTAGGA 597319 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT 116143 |||| ||||| | || || ||||| | || || || || | ||| || | | Sbjct 597318 TACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCT 597259 Query 116144 C----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT- 116198 | | |||| | | ||| | || || || ||||| || || | || | Sbjct 597258 CCATGGAAGCTGTC----AAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGC 597203 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 ||||| | ||||| || || || | | ||| | ||| |||| || ||||| Sbjct 597202 TGCCTAG-CCTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACC 597144 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 116318 ||||||||||||||| || || || |||| ||| || || || || | || || Sbjct 597143 TTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGG 597084 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC---CTTTGTGATTTC 116375 || | || ||| || | | | || || || | ||||| || |||| || Sbjct 597083 GTAGTAGTTGACATCAATGATCTTGTTCAGGTT---GCGCACAACAGTCTGCGTGACGTC 597027 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 || ||||| | | ||| | || | | | ||| || || || || | Sbjct 597026 GTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAG 596967 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||| ||| || || | | |||||| | | ||| || || || || || || Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA-CACGCAT 116554 | ||| || || |||||||||| ||||||||| || ||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | || | || ||||| || |||| || |||||||| | ||| | Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 116615 -CATCGGCGGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 | || | | || | | || || |||| ||||| |||||||||| |||||| Sbjct 596787 GCTTCTGGGCCTTGATCTTTTGTCG--ACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAG 596730 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 |||||| ||||| || || | | || | || || || || || || || | || Sbjct 596729 GGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAG 596670 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 | ||| | || || |||||| || ||||||||||| || || |||||||| || Sbjct 596669 CGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 596610 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||| ||||| ||| ||| | ||||| | || || || || | |||| || || Sbjct 596609 GAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTC 596550 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC-CCTTGC--GACGAC 116908 | || ||| | |||||| || || || || | || | | ||| | || | | | Sbjct 596549 AAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTG-C 596491 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 || | |||| || || | || || ||| || ||||||||||| |||| ||||||| Sbjct 596490 CACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCAT 596431 Query 116969 CAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 ||| || || || || ||| ||| ||| | | | || | | | |||||||| Sbjct 596430 TGGATGTACCGTTGGTACCGGCGATATAAGAGCC--GGTCGCACGAATACGGTGGATGTT 596373 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 | ||| ||||| || ||| ||| ||||| ||||| | |||| || | || || Sbjct 596372 GAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAAT 596313 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 ||||| || |||| |||| | ||| |||||||| |||| || | | || Sbjct 596312 ACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGG 596253 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 |||||||||||||| || || || | ||||| |||| Sbjct 596252 CGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA 596214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506962265960