Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2 183 4e-41
>seq2
Length=5746313
Score = 183 bits (202), Expect = 4e-41
Identities = 1054/1659 (64%), Gaps = 59/1659 (4%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|||||||||||||| |||||||| || || |||||||| | | ||||| |
Sbjct 597844 CGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTCGTG 597785
Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676
| |||| | || ||| | | |||| || ||||| | |||||||| ||||||||
Sbjct 597784 ATCTTGCCCA-TGGTGGGGTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAA 597726
Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 115733
| || || || || ||||| | |||| | | || ||| |||||||| ||
Sbjct 597725 GGCACCACGGTCGGCAGCCATCTG---CACAACGGTTCGCTGAGAGATCTCCCACACGGT 597669
Query 115734 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793
|||| ||| ||| || || | || || | || || ||||| || |||||
Sbjct 597668 CTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACC--- 597612
Query 115794 CTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850
|| | |||| ||| |||||| | | ||||| ||||| || | ||| ||||
Sbjct 597611 CTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTT 597552
Query 115851 CA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAG 115905
|| | ||| | ||||| || ||||| || || ||| || | ||| |||
Sbjct 597551 CAGCAGCCAGGGG----TTGACCACCTGGAACTCGCCAGCTAGGACACGACG-AGAGTAG 597497
Query 115906 ATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 115965
||||||| || || ||||| || ||||| ||||| |||| ||| || | ||| |||
Sbjct 597496 ATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCA 597437
Query 115966 GTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTG 116025
|||||||| || ||||| | || |||||||||| ||| | | | || | || |||
Sbjct 597436 GTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTG 597377
Query 116026 AGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083
||| |||||||| | | | || | | | | |||||| || | || ||||
Sbjct 597376 AGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACG--TTCCACATGTCGTATTGTAGGA 597319
Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT 116143
|||| ||||| | || || ||||| | || || || || | ||| || | |
Sbjct 597318 TACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCT 597259
Query 116144 C----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT- 116198
| | |||| | | ||| | || || || ||||| || || | || |
Sbjct 597258 CCATGGAAGCTGTC----AAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGC 597203
Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258
||||| | ||||| || || || | | ||| | ||| |||| || |||||
Sbjct 597202 TGCCTAG-CCTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACC 597144
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 116318
||||||||||||||| || || || |||| ||| || || || || | || ||
Sbjct 597143 TTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGG 597084
Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC---CTTTGTGATTTC 116375
|| | || ||| || | | | || || || | ||||| || |||| ||
Sbjct 597083 GTAGTAGTTGACATCAATGATCTTGTTCAGGTT---GCGCACAACAGTCTGCGTGACGTC 597027
Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
|| ||||| | | ||| | || | | | ||| || || || || |
Sbjct 597026 GTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAG 596967
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| |||| ||| || || | | |||||| | | ||| || || || || || ||
Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA-CACGCAT 116554
| ||| || || |||||||||| ||||||||| || ||| ||| || | |
Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848
Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614
||||||||||||| | || | || ||||| || |||| || |||||||| | ||| |
Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788
Query 116615 -CATCGGCGGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672
| || | | || | | || || |||| ||||| |||||||||| ||||||
Sbjct 596787 GCTTCTGGGCCTTGATCTTTTGTCG--ACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAG 596730
Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732
|||||| ||||| || || | | || | || || || || || || || | ||
Sbjct 596729 GGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAG 596670
Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792
| ||| | || || |||||| || ||||||||||| || || |||||||| ||
Sbjct 596669 CGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 596610
Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852
||| ||||| ||| ||| | ||||| | || || || || | |||| || ||
Sbjct 596609 GAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTC 596550
Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC-CCTTGC--GACGAC 116908
| || ||| | |||||| || || || || | || | | ||| | || | | |
Sbjct 596549 AAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTG-C 596491
Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968
|| | |||| || || | || || ||| || ||||||||||| |||| |||||||
Sbjct 596490 CACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCAT 596431
Query 116969 CAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026
||| || || || || ||| ||| ||| | | | || | | | ||||||||
Sbjct 596430 TGGATGTACCGTTGGTACCGGCGATATAAGAGCC--GGTCGCACGAATACGGTGGATGTT 596373
Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086
| ||| ||||| || ||| ||| ||||| ||||| | |||| || | || ||
Sbjct 596372 GAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAAT 596313
Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146
||||| || |||| |||| | ||| |||||||| |||| || | | ||
Sbjct 596312 ACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGG 596253
Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185
|||||||||||||| || || || | ||||| ||||
Sbjct 596252 CGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA 596214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506962265960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |