Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 131 3e-25
>seq2
Length=5746313
Score = 131 bits (144), Expect = 3e-25
Identities = 346/522 (66%), Gaps = 15/522 (3%)
Strand=Plus/Minus
Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687
||||| ||||| ||| |||||| || |||||||||||||| ||| || ||
Sbjct 3731691 CTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTT 3731632
Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747
|||||||| |||| ||||| | || | || |||| |||||||| ||
Sbjct 3731631 CTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGAGAGCAAGGAG 3731572
Query 159748 CAACCTGTCTGCCACAAATTCGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC 159805
| | ||| || ||||| || ||||| ||| || | | | |||| || ||||||
Sbjct 3731571 GAGACGGTCCGCAACAAACTCAATGTATTGCTTCA--TGAGGTTGGAGTTCATTCCCAGC 3731514
Query 159806 AG--CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863
|| | || ||||| || || | || ||||| | |||||| |||| || || || |
Sbjct 3731513 AGGGCGCAA--GGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGA 3731456
Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGT--GGTCCTTAAACAGGAG 159921
|||| | ||| ||| || ||| | | | | ||| ||||| ||
Sbjct 3731455 TGATCTTCTGGACC--TTCT---CCTTGCTGGGGCGATTCTTCAGGTGGGAGAACAGCAG 3731401
Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981
||| |||||||| ||| || |||||||| || ||||| ||||||||||| | | | ||
Sbjct 3731400 GCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAG 3731341
Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041
||| ||||| | |||||| |||||||| || |||| || || |||||||| || ||
Sbjct 3731340 GCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAA 3731281
Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101
||| ||||| || || || || || || | | | | |||| | | | |||||
Sbjct 3731280 GATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGT 3731221
Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143
| |||| | |||||| || |||||| || |||||| ||
Sbjct 3731220 GATCCAAGTAAGGGCCCACTCGGCCTTCCTTCGGATGCAAGG 3731179
Score = 118 bits (130), Expect = 2e-21
Identities = 326/489 (67%), Gaps = 8/489 (2%)
Strand=Plus/Minus
Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGCCGGT 203901
|| || |||||||| || | | |||| |||||| | | || ||||||||||| ||
Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGC-GGCCTGGGTGCGGAGGTAGTACATGCCCGT 597825
Query 203902 CTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960
||| ||||| || ||| ||||| | ||||||| | | |||| || | ||||||
Sbjct 597824 CTTCAGGCCTAGCTTCCAGCCCGTGAA-GTGCATGCTCGTGATCTTGCCCATGGTGGGGT 597766
Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019
| |||||| ||||||| ||||||| |||||||||||| ||| || || || || |||
Sbjct 597765 CCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAA-GGCACCACGGTCGGCAGCC 597707
Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079
|| | | || ||| ||| || ||||||||||| |||||| ||| | | || | |
Sbjct 597706 ATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCC 597647
Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138
|| | | | | || || ||| || || || || || | | || || |
Sbjct 597646 GCCGGAATGT-TGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTTCAT 597588
Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198
| || ||||| |||| || || ||| || ||| |||||||| | |||
Sbjct 597587 GTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTG 597528
Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258
|| || || | || || | || | | | | |||| || | || ||||| |||
Sbjct 597527 GAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACTC 597468
Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318
||||||||| | ||||||| || ||||| |||||||| ||||||| | ||| |||
Sbjct 597467 GTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTT 597408
Query 204319 GCGCACACC 204327
||| |||||
Sbjct 597407 GCGGACACC 597399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154891877360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |