Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 131 3e-25 >seq2 Length=5746313 Score = 131 bits (144), Expect = 3e-25 Identities = 346/522 (66%), Gaps = 15/522 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||||| ||| |||||| || |||||||||||||| ||| || || Sbjct 3731691 CTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTT 3731632 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | || | || |||| |||||||| || Sbjct 3731631 CTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGAGAGCAAGGAG 3731572 Query 159748 CAACCTGTCTGCCACAAATTCGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC 159805 | | ||| || ||||| || ||||| ||| || | | | |||| || |||||| Sbjct 3731571 GAGACGGTCCGCAACAAACTCAATGTATTGCTTCA--TGAGGTTGGAGTTCATTCCCAGC 3731514 Query 159806 AG--CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | || ||||| || || | || ||||| | |||||| |||| || || || | Sbjct 3731513 AGGGCGCAA--GGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGA 3731456 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGT--GGTCCTTAAACAGGAG 159921 |||| | ||| ||| || ||| | | | | ||| ||||| || Sbjct 3731455 TGATCTTCTGGACC--TTCT---CCTTGCTGGGGCGATTCTTCAGGTGGGAGAACAGCAG 3731401 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| |||||||| ||| || |||||||| || ||||| ||||||||||| | | | || Sbjct 3731400 GCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAG 3731341 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041 ||| ||||| | |||||| |||||||| || |||| || || |||||||| || || Sbjct 3731340 GCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAA 3731281 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| || || || || || || | | | | |||| | | | ||||| Sbjct 3731280 GATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGT 3731221 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143 | |||| | |||||| || |||||| || |||||| || Sbjct 3731220 GATCCAAGTAAGGGCCCACTCGGCCTTCCTTCGGATGCAAGG 3731179 Score = 118 bits (130), Expect = 2e-21 Identities = 326/489 (67%), Gaps = 8/489 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGCCGGT 203901 || || |||||||| || | | |||| |||||| | | || ||||||||||| || Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGC-GGCCTGGGTGCGGAGGTAGTACATGCCCGT 597825 Query 203902 CTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 ||| ||||| || ||| ||||| | ||||||| | | |||| || | |||||| Sbjct 597824 CTTCAGGCCTAGCTTCCAGCCCGTGAA-GTGCATGCTCGTGATCTTGCCCATGGTGGGGT 597766 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| ||||||| ||||||| |||||||||||| ||| || || || || ||| Sbjct 597765 CCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAA-GGCACCACGGTCGGCAGCC 597707 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | | || ||| ||| || ||||||||||| |||||| ||| | | || | | Sbjct 597706 ATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCC 597647 Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | | | | || || ||| || || || || || | | || || | Sbjct 597646 GCCGGAATGT-TGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTTCAT 597588 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||||| |||| || || ||| || ||| |||||||| | ||| Sbjct 597587 GTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTG 597528 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | | |||| || | || ||||| ||| Sbjct 597527 GAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACTC 597468 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||||||| | ||||||| || ||||| |||||||| ||||||| | ||| ||| Sbjct 597467 GTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTT 597408 Query 204319 GCGCACACC 204327 ||| ||||| Sbjct 597407 GCGGACACC 597399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154891877360