Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 111 4e-19 seq8 105 2e-17 >seq4 Length=3212107 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||||||||| || |||||||| | ||||||||| | | || Sbjct 2383419 CGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTA 2383360 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| ||||||||||| || |||||||| | ||||| ||||| || || || Sbjct 2383359 CGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCC 2383300 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || |||| |||||| | | || || || | Sbjct 2383299 TCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGG 2383240 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || || ||||| || ||||| || || || Sbjct 2383239 GTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || |||| |||||||||| || ||| | ||||| |||| |||||| ||| Sbjct 2383623 GTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCCAACTGCTTGCCG 2383564 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | || || ||||| ||| ||| || || ||||||||||| ||| Sbjct 2383563 GCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTG 2383504 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | || || | || || || || | |||||| ||||| || || | ||| Sbjct 2383503 ACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTC 2383444 Query 199613 TTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 2383443 TTGACAAAGATTTG 2383430 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || || ||||| || | ||||||||| ||| || | ||||| Sbjct 2383866 AGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATCC 2383807 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| |||||||| || ||||| ||| ||||| ||| Sbjct 2383806 TCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCC 2383747 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | || || | | || || || | ||||||||| Sbjct 2383746 TGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTC 2383687 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 2383686 TTTCCCGTCAATGTCTTGACGAAGATCTG 2383658 >seq8 Length=2477967 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||| |||| ||||||||| | | || Sbjct 2273368 CGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 2273309 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | ||||| ||||| || || ||| Sbjct 2273308 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCT 2273249 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 2273248 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 2273189 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || || || || || || Sbjct 2273188 GTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 2273151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921131747077