Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq8 125 7e-24 seq3 120 3e-22 seq4 118 1e-21 >seq2 Length=5746313 Score = 154 bits (170), Expect = 1e-32 Identities = 346/514 (67%), Gaps = 8/514 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || ||||||||||| |||||||| || || || || || | Sbjct 3731703 CATGACACCAGCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCC 3731644 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || || ||| | ||| || || |||||||||| | | ||| ||| | |||| Sbjct 3731643 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCC 3731584 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || | | ||| || | ||| || || ||||| ||||||||| |||| | | | Sbjct 3731583 GAG-AG--CAAGGAGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGA 3731527 Query 132768 ATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | ||||||||| |||| || || || || || | || |||||| || |||| Sbjct 3731526 GTTCATTCCCAGCAGGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGA 3731468 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || |||| ||| | | || | || ||| || || | | || || || Sbjct 3731467 CAGCATCAGTGATGATCTTCTGGACCTTCTCCTTGCTGGGGCGATTCTTCAGGTGGGAGA 3731408 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || |||||||||||| || | ||||||||| | || || | |||||| || Sbjct 3731407 ACAGCAGGCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGA 3731348 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | |||| ||| ||||| || || || || |||||||| || |||| |||||| || Sbjct 3731347 AGGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGC 3731288 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||||| || ||||| || |||| ||| | | || || | || | Sbjct 3731287 TGAAGAAGATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCT 3731228 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | |||||| || ||||| |||||||| Sbjct 3731227 TGTCAGTGATCCAAGTAAGGGCCCACTCGGCCTT 3731194 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| || || | || ||||||| ||||||||| ||| || || Sbjct 3731077 GTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAA 3731018 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| |||||||| | ||| || || ||| |||||||||| || Sbjct 3731017 ACCGTAGAAGCATCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTCGACCAAGTT 3730958 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||||||||| ||||| || ||||| || | ||| |||||| | Sbjct 3730957 CTCGTTGACGATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTATTT 3730898 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||||| | | | ||||||| || ||||||||||||||| | ||| || Sbjct 3730897 CTCATCCTCGTTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTC 3730838 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || || || || |||||||| Sbjct 3730837 GGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACAT 3730802 >seq8 Length=2477967 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| || || || || |||||||| Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| || || || | || |||||| || | || || Sbjct 2273328 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTCCTGCGTCTGCGTGGAGG 2273374 >seq3 Length=5106013 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || ||||||||||| ||||||||| |||| || ||| | ||| Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 ||| | | | | |||| || |||| ||||| ||||| ||||| ||||||||| Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 | || || || | || ||||| ||||| || || | || ||||| ||||||||||| Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850 Query 38425 TCCAAAAGG 38433 |||| |||| Sbjct 1582849 TCCAGAAGG 1582841 >seq4 Length=3212107 Score = 118 bits (130), Expect = 1e-21 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| || || Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || || |||| ||||| ||||| || |||||| |||| Sbjct 2382966 GACACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 2383023 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | || | || ||||| || || || |||| ||||||||| ||||||| Sbjct 2383024 AACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACA 2383083 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 2383084 ACATCCAGAAGGA 2383096 Score = 113 bits (124), Expect = 5e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || ||||| ||||| ||||| ||| | || |||||| | |||||| | Sbjct 2383206 TAGTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCA 2383265 Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369 | | | | || || || | ||||| ||||| || |||||| ||||||||||| Sbjct 2383266 TCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCAT-CCCGCCTGACCAACAGCGA 2383324 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 | || | ||| || || |||||||| || | || |||||| |||||||||||| ||| Sbjct 2383325 TTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAA 2383384 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| | || || || | || |||||| || | || || Sbjct 2383385 AAGGAATCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGG 2383425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || |||||| |||| || ||| | | Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| | |||| || |||| ||||| || || |||||| | || | Sbjct 2383715 GATACTATTGACAACG--TCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATC 2383772 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | || ||||| ||| |||| || | || ||| | | |||||||| Sbjct 2383773 AACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACA 2383832 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || |||||| | || || || |||| || ||| | | ||||| Sbjct 2383833 ACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGG 2383881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172606183040