Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 1e-32
seq8 125 7e-24
seq3 120 3e-22
seq4 118 1e-21
>seq2
Length=5746313
Score = 154 bits (170), Expect = 1e-32
Identities = 346/514 (67%), Gaps = 8/514 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || ||||||||||| |||||||| || || || || || |
Sbjct 3731703 CATGACACCAGCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCC 3731644
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
|| || ||| | ||| || || |||||||||| | | ||| ||| | ||||
Sbjct 3731643 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCC 3731584
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| || | | ||| || | ||| || || ||||| ||||||||| |||| | | |
Sbjct 3731583 GAG-AG--CAAGGAGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGA 3731527
Query 132768 ATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | ||||||||| |||| || || || || || | || |||||| || ||||
Sbjct 3731526 GTTCATTCCCAGCAGGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGA 3731468
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || || |||| ||| | | || | || ||| || || | | || || ||
Sbjct 3731467 CAGCATCAGTGATGATCTTCTGGACCTTCTCCTTGCTGGGGCGATTCTTCAGGTGGGAGA 3731408
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
||| || |||||||||||| || | ||||||||| | || || | |||||| ||
Sbjct 3731407 ACAGCAGGCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGA 3731348
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| |||| ||| ||||| || || || || |||||||| || |||| |||||| ||
Sbjct 3731347 AGGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGC 3731288
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
||||||| |||||||| || ||||| || |||| ||| | | || || | || |
Sbjct 3731287 TGAAGAAGATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCT 3731228
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|| | |||||| || ||||| ||||||||
Sbjct 3731227 TGTCAGTGATCCAAGTAAGGGCCCACTCGGCCTT 3731194
Score = 136 bits (150), Expect = 4e-27
Identities = 196/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| || || | || ||||||| ||||||||| ||| || ||
Sbjct 3731077 GTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAA 3731018
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| |||||||| | ||| || || ||| |||||||||| ||
Sbjct 3731017 ACCGTAGAAGCATCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTCGACCAAGTT 3730958
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||||||||| ||||| || ||||| || | ||| |||||| |
Sbjct 3730957 CTCGTTGACGATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTATTT 3730898
Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||||| | | | ||||||| || ||||||||||||||| | ||| ||
Sbjct 3730897 CTCATCCTCGTTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTC 3730838
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || || || || || ||||||||
Sbjct 3730837 GGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACAT 3730802
>seq8
Length=2477967
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | ||
Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| || || || || ||||||||
Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| ||||| || |||| ||||||||| ||||||||||
Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||| || || || | || |||||| || | || ||
Sbjct 2273328 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTCCTGCGTCTGCGTGGAGG 2273374
>seq3
Length=5106013
Score = 120 bits (132), Expect = 3e-22
Identities = 140/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304
|||| || ||||| || || ||||||||||| ||||||||| |||| || ||| | |||
Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970
Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364
||| | | | | |||| || |||| ||||| ||||| ||||| |||||||||
Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910
Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424
| || || || | || ||||| ||||| || || | || ||||| |||||||||||
Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850
Query 38425 TCCAAAAGG 38433
|||| ||||
Sbjct 1582849 TCCAGAAGG 1582841
>seq4
Length=3212107
Score = 118 bits (130), Expect = 1e-21
Identities = 145/193 (75%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| || ||
Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | |||| | || || |||| ||||| ||||| || |||||| ||||
Sbjct 2382966 GACACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 2383023
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| | || | || ||||| || || || |||| ||||||||| |||||||
Sbjct 2383024 AACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACA 2383083
Query 38422 ACATCCAAAAGGA 38434
||||||| |||||
Sbjct 2383084 ACATCCAGAAGGA 2383096
Score = 113 bits (124), Expect = 5e-20
Identities = 159/221 (72%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || ||||| ||||| ||||| ||| | || |||||| | |||||| |
Sbjct 2383206 TAGTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCA 2383265
Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369
| | | | || || || | ||||| ||||| || |||||| |||||||||||
Sbjct 2383266 TCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCAT-CCCGCCTGACCAACAGCGA 2383324
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
| || | ||| || || |||||||| || | || |||||| |||||||||||| |||
Sbjct 2383325 TTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAA 2383384
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| | || || || | || |||||| || | || ||
Sbjct 2383385 AAGGAATCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGG 2383425
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | ||||| || || |||||| |||| || ||| | |
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | |||| | |||| || |||| ||||| || || |||||| | || |
Sbjct 2383715 GATACTATTGACAACG--TCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATC 2383772
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| || || | || ||||| ||| |||| || | || ||| | | ||||||||
Sbjct 2383773 AACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACA 2383832
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| || |||||| | || || || |||| || ||| | | |||||
Sbjct 2383833 ACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGG 2383881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172606183040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |