Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 215 7e-51 seq9 132 6e-26 seq4 125 9e-24 >seq2 Length=5746313 Score = 215 bits (238), Expect = 7e-51 Identities = 422/623 (68%), Gaps = 12/623 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 1087274 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 1087215 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || ||||| || ||||| ||||||||||| || ||||| || Sbjct 1087214 TCCTCGATGGTAAGCAGGGAGACATCGAAAGTACCGCCACCCAGGTCGAAGATGAGGACA 1087155 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || |||||||| |||||||| || || || || || || || || Sbjct 1087154 TTGCGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCAGCGGCTGTGGGCTCG 1087095 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| || ||||||||| | ||||| || || || ||||| Sbjct 1087094 TTGATGATTCGCAGGACGTTGAGACCAGCAATAAGACCAGCATCCTTGGTGGCCTGTCGC 1087035 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| ||||| | ||| || Sbjct 1087034 TGAGAGTCGTTGAAGTAGGCAGGGACTGTAACGACAGCGTTGGTGACGGTACCACCAAGG 1086975 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | || ||| ||||| | ||||| || |||||||| || | | Sbjct 1086974 TAGGCCTCGGCAGTCTCCCGCATCTTGGTCAAGACCATGGAGGAAATCTCCTCGGGTGTG 1086915 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT---ATCCGCAGCACCG 7873 || || || || || || | ||||| |||| || || || || | || Sbjct 1086914 AAAGTCTTGGTCTCGCCCTTGTACTCAACCTCAACAATAGGCTTGCCATTCTTGTCA--- 1086858 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || | ||| | | | | |||||||| | || |||| |||| | ||||| Sbjct 1086857 ---ATGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGAACCTCGGGGTCGGCGAACTTG 1086801 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | || || | ||||| ||||| || || ||||| ||||||||||| |||||| Sbjct 1086800 CGACCAATCAATCGCTTCGCATCGAAGACGGTGTTGGCAGGGTTCATGGCGACCTGGTTC 1086741 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || ||||| || ||||| ||||| || | || || || || ||| |||| || || Sbjct 1086740 TTGGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGTGTG 1086684 Query 8054 GTTCGATTCCCTTGGTCGTTCGC 8076 ||||| || || ||||| || || Sbjct 1086683 GTTCGGTTACCCTGGTCATTGGC 1086661 Score = 131 bits (144), Expect = 2e-25 Identities = 261/384 (68%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | |||||| || ||||| | || ||||| || || |||||||||||||| Sbjct 1087785 TCACCAGACAGGATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 1087726 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || | | | | |||| ||| Sbjct 1087725 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGTGATGAGCTTCTGAACACGGGGG 1087666 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || ||||| || || || ||||| || | ||| | |||| || |||||||| | | Sbjct 1087665 ATACGTGTGGAACCTCCAACCAACACAACTTCGTGAACTTGGCTCTTGTCGATCTTGGCG 1087606 Query 7190 TCT-CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || | ||| | |||| || | || ||||||| |||| || || || Sbjct 1087605 TCAGCCAAGACACGGT-CGACGGGCTGAATGGTGGAGCGGAACAGGTCCTGGCAAAGCTC 1087547 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 |||||| | |||||||| ||||| || ||||| ||||| || ||| | | || ||||| Sbjct 1087546 CTCAAATCTGGCACGGGTGATGGACGTGTAGAAGTCAACACCCTCGAAGAGGGAGTCAAT 1087487 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 |||||||| || || || | ||| || || || ||||| || ||||| || || ||||| Sbjct 1087486 TTCAATGGACGTCTGGGCAGACGAGGACAAGGTACGCTTGGCACGCTCGCAAGCGGTTCG 1087427 Query 7369 TAAACGACGAAGGGCACGCGGGTT 7392 | ||| || || || || | ||| Sbjct 1087426 GAGACGTCGCAGAGCGCGAGCGTT 1087403 Score = 100 bits (110), Expect = 4e-16 Identities = 284/429 (66%), Gaps = 17/429 (4%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGC--TGAAAAGAGGTCTCGACACC 105616 ||||| ||||||||||| | ||| |||||||| | ||| ||||||| || ||| | Sbjct 596650 TCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGA--TCGCGAGCGC 596593 Query 105617 TCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCC 105676 ||||||| | ||| || ||| || | || || || || | | ||||| ||||| Sbjct 596592 GGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCC 596533 Query 105677 ATGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACAT 105730 | || || | ||||| |||| || | | | | ||| || |||| | ||| | Sbjct 596532 AGGGCTCGAGATAGATAGCAA-AGGCAC--CAGGTCGCTTGTTGCCACCTTGGTCGACGT 596476 Query 105731 ATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTG 105790 ||| || || ||| |||| || | ||| |||| |||||||| |||||| || || | Sbjct 596475 ATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGG 596416 Query 105791 TTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAG 105850 | || |||| || | ||||| | | ||| | || | || ||||| || | Sbjct 596415 TACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGG 596356 Query 105851 CCCACTTACTGAT--ACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908 || ||| ||| ||||| | || || | || || |||||||| || || || || Sbjct 596355 CCATCTTGGAGATCATGGCGCA-AGTC-TTGAGGGTGTCATAAATACCATCAATGCTGTC 596298 Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAA 105968 ||||| | | | ||||| || ||||||| || | ||| |||||||| ||||| Sbjct 596297 ATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAA 596238 Query 105969 CAGAGTTGG 105977 |||||| || Sbjct 596237 CAGAGTAGG 596229 >seq9 Length=2445292 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| |||| |||||||||||| || || || ||||| |||||||| |||| ||| Sbjct 565801 ATCGAAGTCTTGACCACCCAAGTGGGTGTCACCAGCGGTGGCTTTGACGGTGAAGACACC 565742 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || | |||||| | || || ||||| || ||||||||||||| || | || | || Sbjct 565741 GCCCTGAATGTTGAGCAGGGAGACATCGAAAGTACCACCACCCAAATCGTAGATCATGAC 565682 Query 7576 GTTCGTATC---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| | || || | ||||| | || || || ||||| || || || || || Sbjct 565681 ATTCCTCTCCTTGTTGGACTTGTTGGAGCCCAGGCCATAGGCGATGGCGGCGGCGGTAGG 565622 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || ||||| || ||| || || | ||| | | ||||| || |||||||| Sbjct 565621 CTCGTTGATGATACGGAGGACGTTGAGACCGGAAATGGCACCAGCATCCTTGGTCGCTTG 565562 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || ||||| || ||||| ||||| || | ||| || | | ||| ||||| || Sbjct 565561 ACGCTGGTTGTCGTTGAAATAGGCGGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCC 565502 Query 7753 GAGATACGATTCCGCGATATCTTTCAT 7779 ||| | | || || || || ||||| Sbjct 565501 GAGTTTGGTCTCGGCAATCTCCTTCAT 565475 >seq4 Length=3212107 Score = 125 bits (138), Expect = 9e-24 Identities = 226/328 (69%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | || ||||| || ||||| || || || |||| ||| Sbjct 2200944 TCGAAGTCCTCACCACCGAGATGAGTATCACCAGCGGTAGCCAGAACCTCGAAGACACCC 2200885 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | || ||||| || ||||||||||| || || | | || | | Sbjct 2200884 TGGTCAATGGACAGGAGAGAGACATCGAAAGTACCACCACCAAGATCGTAGACGACAATG 2200825 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || | || | | |||| || |||||||| || ||||| || || || || || Sbjct 2200824 TGACGCTCACCATCCTCGGTCTTGTCTAGACCGTAGGCAATAGCAGCGGCAGTAGGCTCG 2200765 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | |||||| || ||| || || |||||||| || | || || || || ||||||| Sbjct 2200764 TTGACAATACGGAGCACA-TTGAGACCAGCAATGGTGCCTGCGTCCTTAGTGGCTTGTCT 2200706 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| || || || ||||| |||| || || ||||| || || Sbjct 2200705 CTGGTTGTCGTTGAAGTAGGCAGGCACAGTGACGACGGCGTGGGTAACCTTCTTGCCCAG 2200646 Query 7756 ATACGATTCCGCGATATCTTTCATTTTG 7783 ||| | || || | || ||||| ||| Sbjct 2200645 ATAGGTCTCAGCAACCTCCTTCATCTTG 2200618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132553886040