Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2 215 7e-51
seq9 132 6e-26
seq4 125 9e-24
>seq2
Length=5746313
Score = 215 bits (238), Expect = 7e-51
Identities = 422/623 (68%), Gaps = 12/623 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 1087274 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 1087215
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | || || ||||| || ||||| ||||||||||| || ||||| ||
Sbjct 1087214 TCCTCGATGGTAAGCAGGGAGACATCGAAAGTACCGCCACCCAGGTCGAAGATGAGGACA 1087155
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || |||||||| |||||||| || || || || || || || ||
Sbjct 1087154 TTGCGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCAGCGGCTGTGGGCTCG 1087095
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || || || || ||| || ||||||||| | ||||| || || || |||||
Sbjct 1087094 TTGATGATTCGCAGGACGTTGAGACCAGCAATAAGACCAGCATCCTTGGTGGCCTGTCGC 1087035
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| |||||||| ||||| || ||||| |||| ||||| | ||| ||
Sbjct 1087034 TGAGAGTCGTTGAAGTAGGCAGGGACTGTAACGACAGCGTTGGTGACGGTACCACCAAGG 1086975
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || || | || ||| ||||| | ||||| || |||||||| || | |
Sbjct 1086974 TAGGCCTCGGCAGTCTCCCGCATCTTGGTCAAGACCATGGAGGAAATCTCCTCGGGTGTG 1086915
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT---ATCCGCAGCACCG 7873
|| || || || || || | ||||| |||| || || || || | ||
Sbjct 1086914 AAAGTCTTGGTCTCGCCCTTGTACTCAACCTCAACAATAGGCTTGCCATTCTTGTCA--- 1086858
Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933
|| | ||| | | | | |||||||| | || |||| |||| | |||||
Sbjct 1086857 ---ATGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGAACCTCGGGGTCGGCGAACTTG 1086801
Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993
| || || | ||||| ||||| || || ||||| ||||||||||| ||||||
Sbjct 1086800 CGACCAATCAATCGCTTCGCATCGAAGACGGTGTTGGCAGGGTTCATGGCGACCTGGTTC 1086741
Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053
|| ||||| || ||||| ||||| || | || || || || ||| |||| || ||
Sbjct 1086740 TTGGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGTGTG 1086684
Query 8054 GTTCGATTCCCTTGGTCGTTCGC 8076
||||| || || ||||| || ||
Sbjct 1086683 GTTCGGTTACCCTGGTCATTGGC 1086661
Score = 131 bits (144), Expect = 2e-25
Identities = 261/384 (68%), Gaps = 2/384 (1%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | |||||| || ||||| | || ||||| || || ||||||||||||||
Sbjct 1087785 TCACCAGACAGGATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 1087726
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || || || | | | | |||| |||
Sbjct 1087725 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGTGATGAGCTTCTGAACACGGGGG 1087666
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| ||||| || || || ||||| || | ||| | |||| || |||||||| | |
Sbjct 1087665 ATACGTGTGGAACCTCCAACCAACACAACTTCGTGAACTTGGCTCTTGTCGATCTTGGCG 1087606
Query 7190 TCT-CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248
|| | ||| | |||| || | || ||||||| |||| || || ||
Sbjct 1087605 TCAGCCAAGACACGGT-CGACGGGCTGAATGGTGGAGCGGAACAGGTCCTGGCAAAGCTC 1087547
Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308
|||||| | |||||||| ||||| || ||||| ||||| || ||| | | || |||||
Sbjct 1087546 CTCAAATCTGGCACGGGTGATGGACGTGTAGAAGTCAACACCCTCGAAGAGGGAGTCAAT 1087487
Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368
|||||||| || || || | ||| || || || ||||| || ||||| || || |||||
Sbjct 1087486 TTCAATGGACGTCTGGGCAGACGAGGACAAGGTACGCTTGGCACGCTCGCAAGCGGTTCG 1087427
Query 7369 TAAACGACGAAGGGCACGCGGGTT 7392
| ||| || || || || | |||
Sbjct 1087426 GAGACGTCGCAGAGCGCGAGCGTT 1087403
Score = 100 bits (110), Expect = 4e-16
Identities = 284/429 (66%), Gaps = 17/429 (4%)
Strand=Plus/Minus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGC--TGAAAAGAGGTCTCGACACC 105616
||||| ||||||||||| | ||| |||||||| | ||| ||||||| || ||| |
Sbjct 596650 TCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGA--TCGCGAGCGC 596593
Query 105617 TCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCC 105676
||||||| | ||| || ||| || | || || || || | | ||||| |||||
Sbjct 596592 GGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCC 596533
Query 105677 ATGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACAT 105730
| || || | ||||| |||| || | | | | ||| || |||| | ||| |
Sbjct 596532 AGGGCTCGAGATAGATAGCAA-AGGCAC--CAGGTCGCTTGTTGCCACCTTGGTCGACGT 596476
Query 105731 ATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTG 105790
||| || || ||| |||| || | ||| |||| |||||||| |||||| || || |
Sbjct 596475 ATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGG 596416
Query 105791 TTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAG 105850
| || |||| || | ||||| | | ||| | || | || ||||| || |
Sbjct 596415 TACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGG 596356
Query 105851 CCCACTTACTGAT--ACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908
|| ||| ||| ||||| | || || | || || |||||||| || || || ||
Sbjct 596355 CCATCTTGGAGATCATGGCGCA-AGTC-TTGAGGGTGTCATAAATACCATCAATGCTGTC 596298
Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAA 105968
||||| | | | ||||| || ||||||| || | ||| |||||||| |||||
Sbjct 596297 ATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAA 596238
Query 105969 CAGAGTTGG 105977
|||||| ||
Sbjct 596237 CAGAGTAGG 596229
>seq9
Length=2445292
Score = 132 bits (146), Expect = 6e-26
Identities = 226/327 (69%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||| |||| |||||||||||| || || || ||||| |||||||| |||| |||
Sbjct 565801 ATCGAAGTCTTGACCACCCAAGTGGGTGTCACCAGCGGTGGCTTTGACGGTGAAGACACC 565742
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|| | |||||| | || || ||||| || ||||||||||||| || | || | ||
Sbjct 565741 GCCCTGAATGTTGAGCAGGGAGACATCGAAAGTACCACCACCCAAATCGTAGATCATGAC 565682
Query 7576 GTTCGTATC---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
||| | || || | ||||| | || || || ||||| || || || || ||
Sbjct 565681 ATTCCTCTCCTTGTTGGACTTGTTGGAGCCCAGGCCATAGGCGATGGCGGCGGCGGTAGG 565622
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || || ||||| || ||| || || | ||| | | ||||| || ||||||||
Sbjct 565621 CTCGTTGATGATACGGAGGACGTTGAGACCGGAAATGGCACCAGCATCCTTGGTCGCTTG 565562
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|| || ||||| || ||||| ||||| || | ||| || | | ||| ||||| ||
Sbjct 565561 ACGCTGGTTGTCGTTGAAATAGGCGGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCC 565502
Query 7753 GAGATACGATTCCGCGATATCTTTCAT 7779
||| | | || || || || |||||
Sbjct 565501 GAGTTTGGTCTCGGCAATCTCCTTCAT 565475
>seq4
Length=3212107
Score = 125 bits (138), Expect = 9e-24
Identities = 226/328 (69%), Gaps = 2/328 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | || ||||| || ||||| || || || |||| |||
Sbjct 2200944 TCGAAGTCCTCACCACCGAGATGAGTATCACCAGCGGTAGCCAGAACCTCGAAGACACCC 2200885
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||||| | | || ||||| || ||||||||||| || || | | || | |
Sbjct 2200884 TGGTCAATGGACAGGAGAGAGACATCGAAAGTACCACCACCAAGATCGTAGACGACAATG 2200825
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || | || | | |||| || |||||||| || ||||| || || || || ||
Sbjct 2200824 TGACGCTCACCATCCTCGGTCTTGTCTAGACCGTAGGCAATAGCAGCGGCAGTAGGCTCG 2200765
Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| | |||||| || ||| || || |||||||| || | || || || || |||||||
Sbjct 2200764 TTGACAATACGGAGCACA-TTGAGACCAGCAATGGTGCCTGCGTCCTTAGTGGCTTGTCT 2200706
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| |||||||| || || || ||||| |||| || || ||||| || ||
Sbjct 2200705 CTGGTTGTCGTTGAAGTAGGCAGGCACAGTGACGACGGCGTGGGTAACCTTCTTGCCCAG 2200646
Query 7756 ATACGATTCCGCGATATCTTTCATTTTG 7783
||| | || || | || ||||| |||
Sbjct 2200645 ATAGGTCTCAGCAACCTCCTTCATCTTG 2200618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132553886040
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