Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 289 4e-73
seq7 98.7 1e-15
>seq2
Length=5746313
Score = 289 bits (320), Expect = 4e-73
Identities = 1038/1595 (65%), Gaps = 51/1595 (3%)
Strand=Plus/Plus
Query 111604 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTG 111663
|||| | |||||| | ||| ||||||| || || | |||||| || || || || |
Sbjct 596113 TGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCG 596172
Query 111664 ATTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCA 111722
| ||| | ||||| ||| || |||||| | ||| |||| ||||| | ||
Sbjct 596173 AGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAGTAC-TTCACACACGCCTCTCCT 596231
Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782
|| || |||||||||||||| || | || |||| ||| |||||| | | |
Sbjct 596232 ACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATG 596291
Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842
||||| || || |||| ||||| | ||| |||| || ||| ||||| |||
Sbjct 596292 AAGGATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCGCCATGATCTCCAAG 596351
Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902
||| ||||||||||| | ||||||| | | | || | | ||| |||
Sbjct 596352 ATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATCGCC 596411
Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962
||||| || ||| ||| |||||||| |||| ||||||||||| || ||| ||| ||
Sbjct 596412 GGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCT 596471
Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAG 112016
|| || || |||||| ||| |||| || || | || ||||||| |||
Sbjct 596472 CGATACGTCGACCAAGGTGGCAA---CAAGCGACCTGGTGCCTTTGCTATCTATCTCGAG 596528
Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076
|| |||||| | ||| || | |||||||| || | || ||||| ||| | || |||
Sbjct 596529 CCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAG 596588
Query 112077 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134
| |||| | |||||||| ||| || ||||||||||| |||||||||||||| | |
Sbjct 596589 GTCCGCGCT--CGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTG 596646
Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194
||||| ||| || | ||| | || | || || | || || || || ||||||
Sbjct 596647 TTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATG 596706
Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254
|| || ||||| || ||||||||| |||||||||| || | || | | |
Sbjct 596707 TTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAG-GTCGA 596765
Query 112255 CGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
| | | | || | || | | ||| | |||||||| || | || ||||||||||||
Sbjct 596766 CAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGT 596825
Query 112314 ACACCATATATGCTTTACAAAGACGCCTG-TAACCAAAAGAGTAATCAAAAGAATTTGGG 112372
| || | ||||| ||||| ||| | || |||| |||||||| |||||||| ||||
Sbjct 596826 AACCCTTTCATGCTCTACAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCTGGG 596884
Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||| || || || ||||| || || ||| | |||| | | ||||||
Sbjct 596885 CACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGT 596944
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 112492
|| || || || | || || | ||||| ||| || || || | | | || | | |
Sbjct 596945 CGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA-CTACA-ACCAGGGC 597002
Query 112493 --ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550
| ||| | | | || || ||||| || ||| | ||||| ||||| ||||
Sbjct 597003 GTCTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCAACCTGAACAAG 597062
Query 112551 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610
| |||||| || | ||||| ||| | || || || || ||| ||||||||
Sbjct 597063 ATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAACATGCGACACCGT 597122
Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATT 112669
|| || || ||||||||||||||||| || |||| | ||| | || || || ||
Sbjct 597123 CCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTC--TAGCCCTCCGCATGCCTT 597180
Query 112670 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || || ||| || | | | |||| || || || ||||| || || || | |
Sbjct 597181 TCGAGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGACCATTTACCATGGTG 597240
Query 112729 CTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785
| ||||| | ||| |||| | || ||| | || || || |||| ||||
Sbjct 597241 C-CTTGA--CAGCTTCCATGGAGATCGCCAAGGAGCAAGGACCCTACTCCACCTACGAGG 597297
Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA----AG 112841
| || || | || || || | || |||| || |||| |||| || | ||| |
Sbjct 597298 GCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGT-GGAACGTCACCCCATCTGAC 597356
Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901
||| | |||||||| ||||| || | |||||| |||| ||| | || ||||||
Sbjct 597357 CTT---TGGGACTGGGAGAGCCTCAAAGAGCAGATCAAGCAGAATGGTGTCCGCAACAGT 597413
Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961
|| |||||||| || ||||| || ||| || | || ||| |||| || || || ||
Sbjct 597414 CTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAACAACGAGTGT 597473
Query 112962 TTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020
|| || ||||| || | |||||||| ||| | | ||| || || ||||| | |
Sbjct 597474 TTCGAGCCCTATACATCCAACATCTACTCT-CGTCGTGTCCTAGCTGGCGAGTTCCAGGT 597532
Query 113021 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 113080
|||||| || || | |||||| || || ||||| |||||| | | |||||
Sbjct 597533 GGTCAACCCCTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGACAACATGAA 597592
Query 113081 GGATC---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATG 113136
| ||| ||| || ||| |||||||||||| || || ||| | ||||| | |
Sbjct 597593 GAATCGTATCATTGCTGA----GGGTGGTTCCATCCAGAACATTCCCAACATTCCGGCGG 597648
Query 113137 AAATTAAGAAGTTGTACCGCACAGTTTGGGAAATC 113171
| || ||| ||||| || || ||||| |||
Sbjct 597649 AGATCAAGGCCCTGTACAAGACCGTGTGGGAGATC 597683
Score = 113 bits (124), Expect = 6e-20
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
|||||||| | || | |||| || || ||| ||||||||||||||| ||| |||
Sbjct 3731237 CCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCT 3731296
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
|| | | || | |||||||||||||| ||||| ||||| || || |||||||||||
Sbjct 3731297 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACG 3731356
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|| | ||||| ||||||||||| || ||| || |||||
Sbjct 3731357 AGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGC 3731396
>seq7
Length=2827642
Score = 98.7 bits (108), Expect = 1e-15
Identities = 240/353 (68%), Gaps = 13/353 (4%)
Strand=Plus/Minus
Query 16064 GGCATCAATCTCATCAATGAAGACGAT-GCATGGTTGATTTTCGCG-AGCGACTTCAAAG 16121
|||||| | ||||||||||||| ||| ||| || || || | ||| | | ||
Sbjct 316786 GGCATCCAATTCATCAATGAAGATGATAGCAGGG--GACTTGGACTTAGCAGCAGCGAAA 316729
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
||||| || || ||||||||||| ||||| || | | ||| |||| || || | |
Sbjct 316728 AGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACCAGA 316670
Query 16182 CAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
||| | || ||| |||||| || || || |||| || || |||||||| ||||| ||
Sbjct 316669 CATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTTTCC 316610
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAG 16298
||||| || ||| | |||||| | || |||| |||| | ||| || |||
Sbjct 316609 GGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGAAAA 316550
Query 16299 TATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCA 16358
| |||| | | |||| | ||||| || || || ||| | || || || || | |||
Sbjct 316549 TTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCATCA 316492
Query 16359 ATCCCCTCAACATCGGTAAACCGAGTTTCAATTTCTTGTTCGGCATTGAACTC 16411
||| | |||||||| |||||||| | ||| ||||| || |||| |||
Sbjct 316491 CACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742159462320
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