Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 289 4e-73 seq7 98.7 1e-15 >seq2 Length=5746313 Score = 289 bits (320), Expect = 4e-73 Identities = 1038/1595 (65%), Gaps = 51/1595 (3%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTG 111663 |||| | |||||| | ||| ||||||| || || | |||||| || || || || | Sbjct 596113 TGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCG 596172 Query 111664 ATTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCA 111722 | ||| | ||||| ||| || |||||| | ||| |||| ||||| | || Sbjct 596173 AGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAGTAC-TTCACACACGCCTCTCCT 596231 Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782 || || |||||||||||||| || | || |||| ||| |||||| | | | Sbjct 596232 ACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATG 596291 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842 ||||| || || |||| ||||| | ||| |||| || ||| ||||| ||| Sbjct 596292 AAGGATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCGCCATGATCTCCAAG 596351 Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902 ||| ||||||||||| | ||||||| | | | || | | ||| ||| Sbjct 596352 ATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATCGCC 596411 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| || ||| ||| |||||||| |||| ||||||||||| || ||| ||| || Sbjct 596412 GGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCT 596471 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAG 112016 || || || |||||| ||| |||| || || | || ||||||| ||| Sbjct 596472 CGATACGTCGACCAAGGTGGCAA---CAAGCGACCTGGTGCCTTTGCTATCTATCTCGAG 596528 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || |||||| | ||| || | |||||||| || | || ||||| ||| | || ||| Sbjct 596529 CCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAG 596588 Query 112077 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 | |||| | |||||||| ||| || ||||||||||| |||||||||||||| | | Sbjct 596589 GTCCGCGCT--CGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTG 596646 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 ||||| ||| || | ||| | || | || || | || || || || |||||| Sbjct 596647 TTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATG 596706 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254 || || ||||| || ||||||||| |||||||||| || | || | | | Sbjct 596707 TTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAG-GTCGA 596765 Query 112255 CGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 | | | | || | || | | ||| | |||||||| || | || |||||||||||| Sbjct 596766 CAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGT 596825 Query 112314 ACACCATATATGCTTTACAAAGACGCCTG-TAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 | || | ||||| ||||| ||| | || |||| |||||||| |||||||| |||| Sbjct 596826 AACCCTTTCATGCTCTACAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCTGGG 596884 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||| || || || ||||| || || ||| | |||| | | |||||| Sbjct 596885 CACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGT 596944 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 112492 || || || || | || || | ||||| ||| || || || | | | || | | | Sbjct 596945 CGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA-CTACA-ACCAGGGC 597002 Query 112493 --ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550 | ||| | | | || || ||||| || ||| | ||||| ||||| |||| Sbjct 597003 GTCTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCAACCTGAACAAG 597062 Query 112551 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 | |||||| || | ||||| ||| | || || || || ||| |||||||| Sbjct 597063 ATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAACATGCGACACCGT 597122 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATT 112669 || || || ||||||||||||||||| || |||| | ||| | || || || || Sbjct 597123 CCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTC--TAGCCCTCCGCATGCCTT 597180 Query 112670 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || || ||| || | | | |||| || || || ||||| || || || | | Sbjct 597181 TCGAGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGACCATTTACCATGGTG 597240 Query 112729 CTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 | ||||| | ||| |||| | || ||| | || || || |||| |||| Sbjct 597241 C-CTTGA--CAGCTTCCATGGAGATCGCCAAGGAGCAAGGACCCTACTCCACCTACGAGG 597297 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA----AG 112841 | || || | || || || | || |||| || |||| |||| || | ||| | Sbjct 597298 GCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGT-GGAACGTCACCCCATCTGAC 597356 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 ||| | |||||||| ||||| || | |||||| |||| ||| | || |||||| Sbjct 597357 CTT---TGGGACTGGGAGAGCCTCAAAGAGCAGATCAAGCAGAATGGTGTCCGCAACAGT 597413 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 || |||||||| || ||||| || ||| || | || ||| |||| || || || || Sbjct 597414 CTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAACAACGAGTGT 597473 Query 112962 TTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 || || ||||| || | |||||||| ||| | | ||| || || ||||| | | Sbjct 597474 TTCGAGCCCTATACATCCAACATCTACTCT-CGTCGTGTCCTAGCTGGCGAGTTCCAGGT 597532 Query 113021 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 113080 |||||| || || | |||||| || || ||||| |||||| | | ||||| Sbjct 597533 GGTCAACCCCTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGACAACATGAA 597592 Query 113081 GGATC---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATG 113136 | ||| ||| || ||| |||||||||||| || || ||| | ||||| | | Sbjct 597593 GAATCGTATCATTGCTGA----GGGTGGTTCCATCCAGAACATTCCCAACATTCCGGCGG 597648 Query 113137 AAATTAAGAAGTTGTACCGCACAGTTTGGGAAATC 113171 | || ||| ||||| || || ||||| ||| Sbjct 597649 AGATCAAGGCCCTGTACAAGACCGTGTGGGAGATC 597683 Score = 113 bits (124), Expect = 6e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||||| | || | |||| || || ||| ||||||||||||||| ||| ||| Sbjct 3731237 CCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCT 3731296 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | |||||||||||||| ||||| ||||| || || ||||||||||| Sbjct 3731297 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACG 3731356 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || | ||||| ||||||||||| || ||| || ||||| Sbjct 3731357 AGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGC 3731396 >seq7 Length=2827642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/353 (68%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGAT-GCATGGTTGATTTTCGCG-AGCGACTTCAAAG 16121 |||||| | ||||||||||||| ||| ||| || || || | ||| | | || Sbjct 316786 GGCATCCAATTCATCAATGAAGATGATAGCAGGG--GACTTGGACTTAGCAGCAGCGAAA 316729 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || ||||||||||| ||||| || | | ||| |||| || || | | Sbjct 316728 AGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACCAGA 316670 Query 16182 CAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 ||| | || ||| |||||| || || || |||| || || |||||||| ||||| || Sbjct 316669 CATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTTTCC 316610 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAG 16298 ||||| || ||| | |||||| | || |||| |||| | ||| || ||| Sbjct 316609 GGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGAAAA 316550 Query 16299 TATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCA 16358 | |||| | | |||| | ||||| || || || ||| | || || || || | ||| Sbjct 316549 TTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCATCA 316492 Query 16359 ATCCCCTCAACATCGGTAAACCGAGTTTCAATTTCTTGTTCGGCATTGAACTC 16411 ||| | |||||||| |||||||| | ||| ||||| || |||| ||| Sbjct 316491 CACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742159462320