Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq5 127 2e-24 >seq2 Length=5746313 Score = 176 bits (194), Expect = 5e-39 Identities = 1012/1599 (63%), Gaps = 57/1599 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||| ||||| || || |||||||| |||||| || || ||||| | | | | | Sbjct 597752 GTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACGGT 597693 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || | || ||||| || |||||||||| |||||| || | ||||||| Sbjct 597692 TCGCTGAGAG---ATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTT 597636 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 ||||| || || || ||||| || | |||| ||| |||||| | | || Sbjct 597635 GGGAATGTTCTGGATGGAACCACC---CTCAGCAATGATACGATTCTTCATGTTGTCGGA 597579 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||| ||||| | | ||| || | | || ||||||||| || || || Sbjct 597578 CCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCC 597519 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| || || || ||||||||| | || ||||| ||||||||||| |||||||| Sbjct 597518 AGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCC 597459 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||| || | || || |||||||| |||||||| | |||||||| |||| ||| Sbjct 597458 CAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACC 597399 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCG----TCCCAATCATAACGACCACTAAATTTAG 109909 ||| ||| | | ||| | ||| | ||||| || || | | | || | Sbjct 597398 ATTCTGCTTGATCTGCT----CTTTGAGGCTCTCCCAGTCCCAAAGGTC---AGATGGGG 597346 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 | | | |||||| || ||| || | ||||| | |||| || |||| | | Sbjct 597345 T---GACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGG 597289 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC-CTCTAGTGCCGCATGATAC 110028 | ||| | || | ||| ||| | ||| ||||| || || || |||| || Sbjct 597288 TGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAG-GCACCATGGTAA 597230 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || ||||| || || || || | | | || ||| | | ||||| || | | Sbjct 597229 ATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGCATGCGG 597170 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | ||| |||| || ||||| || |||||||| || ||||| || || |||| Sbjct 597169 AGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATG 597110 Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || | || || || || ||||| ||||| || |||| | || || || Sbjct 597109 TTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTG 597050 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTCTCC 110265 | ||||||| ||||| || || || || | || || | ||| | | | Sbjct 597049 CGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAG-ACGCCCTGG--TTG 596993 Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 | | ||| | ||| ||||| | ||| || | |||||| || | ||| || Sbjct 596992 TAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGGT 596933 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 | | |||||| | || || || || | || || || ||| |||| |||||| Sbjct 596932 GCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTT 596873 Query 110386 TGATTCGATTTGGAGTT-GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 || || ||| ||| ||||| ||||| ||||||||| | ||| ||||||| || || Sbjct 596872 TGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGT 596814 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGA 110502 ||| | || ||||| || | ||| | | || | | | | | ||| || | | | Sbjct 596813 CTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTTTTGTCG--ACCTCGG 596756 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 || || |||||||||| ||| | | |||| || || | ||||| ||||| | || Sbjct 596755 CCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGG 596696 Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622 || || | ||| || | || | ||| | ||| || |||||| | |||||| Sbjct 596695 CCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATG 596636 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682 || || || |||||||| | || |||||| || || || ||||||| | ||| Sbjct 596635 AAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCA 596576 Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACA 110742 ||||| || || |||| || || | || ||| |||||||| || |||||||||| | Sbjct 596575 TGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATA 596516 Query 110743 GCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 || | || || | | || || | |||| || || || || ||| ||| Sbjct 596515 GCAAAGGCACC---AGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTG 596459 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || || | ||||| |||| ||| |||| |||| ||| || ||||| || || Sbjct 596458 AACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAG 596399 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TT 110914 | |||||||| |||||| | | ||| |||||||| ||| ||| || | Sbjct 596398 CCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATG 596339 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 | ||| | ||| |||| || |||||||||||||||| || |||| || | | | Sbjct 596338 GCGCA-AGTCT-TGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAA 596281 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | |||||||| |||| ||||| | ||||| || || ||||| || ||||| | || | Sbjct 596280 GGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGT 596221 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| || |||| |||||| |||||| || || Sbjct 596220 GTGTGA--AGTACTTGCTGGACATGAGGTTGTAAGTCTC 596184 >seq5 Length=3093439 Score = 127 bits (140), Expect = 2e-24 Identities = 283/414 (68%), Gaps = 17/414 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || |||||||| || || || | | || | || || | ||| || | ||| ||| || Sbjct 900982 CGGTCGAAACGTCCAGGTCGCATCAAGGCCTTGTCCAGGACATCTACCCTGTTGGTACCG 901041 Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| ||| ||||| | | |||| ||| ||| || ||||| ||||| || | ||| Sbjct 901042 GCAAGGACAACAAT--CTG-CTCACGCGTGTTGAAGCCATCCATCTCTGTAAGGATTTGG 901098 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC----ACCTGCCGAACGCTTCTT 11675 |||| ||| ||| ||||| ||||| || || ||| | | ||| | | Sbjct 901099 TTGAGAGTCGCTTCTCGCTCGTCGTTACCTC-CAAGCCGTTGACCCTCGGCACGGGACCT 901157 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT- 11734 || | ||| || || || |||||||| ||||| || ||| ||| ||| || ||| Sbjct 901158 GCCAATAGCATCGATTTCGTCGATGAAGACGATGCAAGGTGCGTTCTTACGCGC-TGTAG 901216 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--C 11792 |||| || || ||||| | |||||| ||||| ||||||||||| ||||| | || | Sbjct 901217 CGAACAGATCTCGTACTCTAGACGCTCCCACACCGACGAACATCTCGACGAACTCTGAAC 901276 Query 11793 GGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || | |||||||| |||||| || ||||| ||||| | || ||||| || || Sbjct 901277 CGCTG-ACACTGAA-GAAGGGCACCCCCGACTCCCCAGCCGTAGCCTTGGCGAGCAGGGT 901334 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || ||||| || || | || || |||| || || || |||||||||||||| Sbjct 901335 TTTGCCCGTTCCTGGAGGTCCGGCAAGAATAGCACCGCGCGGGATCTTGGCACC 901388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975771771800