Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 5e-39
seq5 127 2e-24
>seq2
Length=5746313
Score = 176 bits (194), Expect = 5e-39
Identities = 1012/1599 (63%), Gaps = 57/1599 (4%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||| ||||| || || |||||||| |||||| || || ||||| | | | | |
Sbjct 597752 GTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACGGT 597693
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
| || | || ||||| || |||||||||| |||||| || | |||||||
Sbjct 597692 TCGCTGAGAG---ATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTT 597636
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673
||||| || || || ||||| || | |||| ||| |||||| | | ||
Sbjct 597635 GGGAATGTTCTGGATGGAACCACC---CTCAGCAATGATACGATTCTTCATGTTGTCGGA 597579
Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733
||| ||||| | | ||| || | | || ||||||||| || || ||
Sbjct 597578 CCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCC 597519
Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793
||| || || || ||||||||| | || ||||| ||||||||||| ||||||||
Sbjct 597518 AGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCC 597459
Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853
||||| || | || || |||||||| |||||||| | |||||||| |||| |||
Sbjct 597458 CAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACC 597399
Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCG----TCCCAATCATAACGACCACTAAATTTAG 109909
||| ||| | | ||| | ||| | ||||| || || | | | || |
Sbjct 597398 ATTCTGCTTGATCTGCT----CTTTGAGGCTCTCCCAGTCCCAAAGGTC---AGATGGGG 597346
Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969
| | | |||||| || ||| || | ||||| | |||| || |||| | |
Sbjct 597345 T---GACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGG 597289
Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC-CTCTAGTGCCGCATGATAC 110028
| ||| | || | ||| ||| | ||| ||||| || || || |||| ||
Sbjct 597288 TGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAG-GCACCATGGTAA 597230
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088
|| ||||| || || || || | | | || ||| | | ||||| || | |
Sbjct 597229 ATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGCATGCGG 597170
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| ||| |||| || ||||| || |||||||| || ||||| || || ||||
Sbjct 597169 AGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATG 597110
Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208
|| | || || || || ||||| ||||| || |||| | || || ||
Sbjct 597109 TTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTG 597050
Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTCTCC 110265
| ||||||| ||||| || || || || | || || | ||| | | |
Sbjct 597049 CGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAG-ACGCCCTGG--TTG 596993
Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325
| | ||| | ||| ||||| | ||| || | |||||| || | ||| ||
Sbjct 596992 TAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGGT 596933
Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385
| | |||||| | || || || || | || || || ||| |||| ||||||
Sbjct 596932 GCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTT 596873
Query 110386 TGATTCGATTTGGAGTT-GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444
|| || ||| ||| ||||| ||||| ||||||||| | ||| ||||||| || ||
Sbjct 596872 TGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGT 596814
Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGA 110502
||| | || ||||| || | ||| | | || | | | | | ||| || | | |
Sbjct 596813 CTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTTTTGTCG--ACCTCGG 596756
Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562
|| || |||||||||| ||| | | |||| || || | ||||| ||||| | ||
Sbjct 596755 CCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGG 596696
Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622
|| || | ||| || | || | ||| | ||| || |||||| | ||||||
Sbjct 596695 CCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATG 596636
Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682
|| || || |||||||| | || |||||| || || || ||||||| | |||
Sbjct 596635 AAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCA 596576
Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACA 110742
||||| || || |||| || || | || ||| |||||||| || |||||||||| |
Sbjct 596575 TGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATA 596516
Query 110743 GCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796
|| | || || | | || || | |||| || || || || ||| |||
Sbjct 596515 GCAAAGGCACC---AGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTG 596459
Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856
|| || | ||||| |||| ||| |||| |||| ||| || ||||| || ||
Sbjct 596458 AACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAG 596399
Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TT 110914
| |||||||| |||||| | | ||| |||||||| ||| ||| || |
Sbjct 596398 CCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATG 596339
Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974
| ||| | ||| |||| || |||||||||||||||| || |||| || | | |
Sbjct 596338 GCGCA-AGTCT-TGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAA 596281
Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034
| |||||||| |||| ||||| | ||||| || || ||||| || ||||| | || |
Sbjct 596280 GGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGT 596221
Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
| ||| || |||| |||||| |||||| || ||
Sbjct 596220 GTGTGA--AGTACTTGCTGGACATGAGGTTGTAAGTCTC 596184
>seq5
Length=3093439
Score = 127 bits (140), Expect = 2e-24
Identities = 283/414 (68%), Gaps = 17/414 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| |||||||| || || || | | || | || || | ||| || | ||| ||| ||
Sbjct 900982 CGGTCGAAACGTCCAGGTCGCATCAAGGCCTTGTCCAGGACATCTACCCTGTTGGTACCG 901041
Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619
|||| ||| ||||| | | |||| ||| ||| || ||||| ||||| || | |||
Sbjct 901042 GCAAGGACAACAAT--CTG-CTCACGCGTGTTGAAGCCATCCATCTCTGTAAGGATTTGG 901098
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC----ACCTGCCGAACGCTTCTT 11675
|||| ||| ||| ||||| ||||| || || ||| | | ||| | |
Sbjct 901099 TTGAGAGTCGCTTCTCGCTCGTCGTTACCTC-CAAGCCGTTGACCCTCGGCACGGGACCT 901157
Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT- 11734
|| | ||| || || || |||||||| ||||| || ||| ||| ||| || |||
Sbjct 901158 GCCAATAGCATCGATTTCGTCGATGAAGACGATGCAAGGTGCGTTCTTACGCGC-TGTAG 901216
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--C 11792
|||| || || ||||| | |||||| ||||| ||||||||||| ||||| | || |
Sbjct 901217 CGAACAGATCTCGTACTCTAGACGCTCCCACACCGACGAACATCTCGACGAACTCTGAAC 901276
Query 11793 GGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852
|| | |||||||| |||||| || ||||| ||||| | || ||||| || ||
Sbjct 901277 CGCTG-ACACTGAA-GAAGGGCACCCCCGACTCCCCAGCCGTAGCCTTGGCGAGCAGGGT 901334
Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
|| ||||| || || | || || |||| || || || ||||||||||||||
Sbjct 901335 TTTGCCCGTTCCTGGAGGTCCGGCAAGAATAGCACCGCGCGGGATCTTGGCACC 901388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975771771800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |