Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 221 1e-52
seq7 95.1 1e-14
>seq2
Length=5746313
Score = 221 bits (244), Expect = 1e-52
Identities = 1017/1586 (64%), Gaps = 33/1586 (2%)
Strand=Plus/Minus
Query 105751 GATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG 105810
||| |||||||| || ||| || |||||| || | || || | | || || ||
Sbjct 597683 GATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTG 597624
Query 105811 AATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTT 105870
|| ||||| ||| | | || ||| |||||| | | |||||| ||||| || |
Sbjct 597623 GATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTC 597564
Query 105871 CTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCT 105930
||| || || | || |||||| | | ||||| || || ||| | |
Sbjct 597563 GACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACG 597504
Query 105931 CAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGG 105989
||| |||||||| | || ||||| || || || || || || |||| ||| || | |
Sbjct 597503 -AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATG 597445
Query 105990 TGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGC 106049
| ||| || ||||| || |||||||| |||||||| || | ||| || | ||||||
Sbjct 597444 TACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCT 597385
Query 106050 GTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAA 106107
| || ||||| |||||||| | | | || | || | || |||| |||| || |
Sbjct 597384 GCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTG-ACGTTCC-ACATGTCGTA 597327
Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167
||| || | || ||||| || || ||||| | || |||| ||||| | |
Sbjct 597326 TTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTT 597267
Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227
|| | || | || || || | || || ||||| || ||||| | ||
Sbjct 597266 GGCGATCTCCATGGAAGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTT 597207
Query 106228 CATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286
| || | | || || || || ||| || | |||| | ||| |||| || |
Sbjct 597206 GAGCTGCCTAGCCTCGGGAGACTCGAAAGGCAT-GCGGAGGGCTAGAAAAGCATCAGCAA 597148
Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346
||||||| ||||| | || || || | ||||||||| || || ||||| | ||
Sbjct 597147 GACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAA 597088
Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406
| || || | || ||||||| ||| || || |||| ||| |||| |
Sbjct 597087 CAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGT 597028
Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466
| || || || | | | ||| | || | | | ||| || || || || |
Sbjct 597027 CGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCA 596968
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
|| ||||||||||| || || |||||| | | ||| || | || || || |
Sbjct 596967 GAGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGC 596908
Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG-CACGCA 106585
| | || || || || || |||| ||||||||||||||||| |||| || |
Sbjct 596907 AGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG- 596849
Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC 106645
||||||||||||||| | || | || ||||| ||||| | || ||||| || | |||
Sbjct 596848 TCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAG 596789
Query 106646 A-CATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGA 106703
| | || | | || | | | || | || || ||||| ||||||||||| |||||
Sbjct 596788 AGCTTCTGGGCCTTGATC--TTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGA 596731
Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763
|||| || ||||| || || | |||| || || || || | || || | ||
Sbjct 596730 GGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAA 596671
Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT 106822
| | ||| | || || |||||| || |||||||| || || |||||||| |||| |
Sbjct 596670 GCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAA 596611
Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882
| ||| ||||| | | || ||||||| | ||| ||||| ||| | || ||||||
Sbjct 596610 GGAAA-AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAAC 596552
Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGA 106936
|| | || ||| | |||||| ||||| ||||||| || | || || ||| |
Sbjct 596551 TCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTT--GT 596494
Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996
| ||| |||| | || || || || ||| ||| || ||||||||||| |||| ||||
Sbjct 596493 TG-CCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435
Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056
|||| ||| ||| || || || ||| ||| | || | | | ||||||
Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375
Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCAT 107114
| | || ||||| || ||| ||| ||||| | ||||| | | | | || || |||
Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTGAGGGTGTCAT 596317
Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174
| ||||| | || ||| ||||| || ||| |||||||||| |||| ||| |
Sbjct 596316 AAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCT 596257
Query 107175 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACAT 107232
|| |||||||| ||||| || || || | ||||| |||| || |||| ||||||
Sbjct 596256 GGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA-GTA-CTTGCTGGACAT 596199
Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292
|| ||| ||||| | || || ||||| || || ||| || | || |||||
Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACG 596139
Query 107293 CATAAACATGTATTGGGGTGTTTCCA 107318
||| | ||| | || ||| | ||||
Sbjct 596138 CATGATCATATGCTGTGGTCTCTCCA 596113
>seq7
Length=2827642
Score = 95.1 bits (104), Expect = 1e-14
Identities = 352/536 (66%), Gaps = 28/536 (5%)
Strand=Plus/Minus
Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250
|||||| |||||||| ||||| ||| || | || | || || | |||||||||
Sbjct 316957 ACGATCGAAGCGACCAGGACGCGTGAGGGCCTTGTCCAACATCTCGGGGAAATTCGTCGC 316898
Query 9251 GGCGATGACAACAATACCTGTTTCATT-ATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
| || | || || | || | | || ||||||||| |||| ||| || | ||||| |
Sbjct 316897 ACCAATAATAATAACAT-TGCTGCTTTGATCAAAACCGTCCAGCTCAGTGAGTAGTTGAT 316839
Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369
| | ||||| | ||| ||| || ||| | | | || | || | || |
Sbjct 316838 TCAGGGTTTGCT-----TCA-CATAAGC-GGCGTCGCGC--GCGTTACGGCGGCCACCAA 316788
Query 9370 CGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGATTTCA 9425
|||||| | ||||||||||||| ||| || || ||| || || | | |
Sbjct 316787 TGGCATCCAATTCATCAATGAAGATGATAGCAGGGGACTTGGACTTAGCAGCAG----CG 316732
Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485
|| ||||| ||||||| |||||||| ||||| || | | ||| |||| || || |
Sbjct 316731 AAAAGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACC 316673
Query 9486 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544
|||| | || ||| |||||| || || || |||| || || |||||||| |||||
Sbjct 316672 AGACATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTT 316613
Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA--CTTCCA 9602
|| ||||| || ||| | |||||| | ||| |||| |||| | ||| || |
Sbjct 316612 TCCGGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGA 316553
Query 9603 AAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 9662
|| | |||| | | |||| | ||||| || || || ||| | || || || || |
Sbjct 316552 AAATTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCA 316495
Query 9663 TCAATCCCCTCAACATCGGTAAACCGGGTTTCAATTTCTTGTTCGGCATTGAACTC 9718
||| ||| | |||||||| ||||| || | ||| ||||| || |||| |||
Sbjct 316494 TCACACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980571382440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |