Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 seq7 95.1 1e-14 >seq2 Length=5746313 Score = 221 bits (244), Expect = 1e-52 Identities = 1017/1586 (64%), Gaps = 33/1586 (2%) Strand=Plus/Minus Query 105751 GATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG 105810 ||| |||||||| || ||| || |||||| || | || || | | || || || Sbjct 597683 GATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTG 597624 Query 105811 AATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTT 105870 || ||||| ||| | | || ||| |||||| | | |||||| ||||| || | Sbjct 597623 GATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTC 597564 Query 105871 CTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCT 105930 ||| || || | || |||||| | | ||||| || || ||| | | Sbjct 597563 GACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACG 597504 Query 105931 CAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGG 105989 ||| |||||||| | || ||||| || || || || || || |||| ||| || | | Sbjct 597503 -AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATG 597445 Query 105990 TGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGC 106049 | ||| || ||||| || |||||||| |||||||| || | ||| || | |||||| Sbjct 597444 TACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCT 597385 Query 106050 GTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAA 106107 | || ||||| |||||||| | | | || | || | || |||| |||| || | Sbjct 597384 GCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTG-ACGTTCC-ACATGTCGTA 597327 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 ||| || | || ||||| || || ||||| | || |||| ||||| | | Sbjct 597326 TTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTT 597267 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 || | || | || || || | || || ||||| || ||||| | || Sbjct 597266 GGCGATCTCCATGGAAGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTT 597207 Query 106228 CATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | || | | || || || || ||| || | |||| | ||| |||| || | Sbjct 597206 GAGCTGCCTAGCCTCGGGAGACTCGAAAGGCAT-GCGGAGGGCTAGAAAAGCATCAGCAA 597148 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 ||||||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 597147 GACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAA 597088 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | || || | || ||||||| ||| || || |||| ||| |||| | Sbjct 597087 CAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGT 597028 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | || || || | | | ||| | || | | | ||| || || || || | Sbjct 597027 CGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCA 596968 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 || ||||||||||| || || |||||| | | ||| || | || || || | Sbjct 596967 GAGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGC 596908 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG-CACGCA 106585 | | || || || || || |||| ||||||||||||||||| |||| || | Sbjct 596907 AGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG- 596849 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC 106645 ||||||||||||||| | || | || ||||| ||||| | || ||||| || | ||| Sbjct 596848 TCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAG 596789 Query 106646 A-CATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGA 106703 | | || | | || | | | || | || || ||||| ||||||||||| ||||| Sbjct 596788 AGCTTCTGGGCCTTGATC--TTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGA 596731 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 |||| || ||||| || || | |||| || || || || | || || | || Sbjct 596730 GGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAA 596671 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT 106822 | | ||| | || || |||||| || |||||||| || || |||||||| |||| | Sbjct 596670 GCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAA 596611 Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 | ||| ||||| | | || ||||||| | ||| ||||| ||| | || |||||| Sbjct 596610 GGAAA-AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAAC 596552 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGA 106936 || | || ||| | |||||| ||||| ||||||| || | || || ||| | Sbjct 596551 TCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTT--GT 596494 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 | ||| |||| | || || || || ||| ||| || ||||||||||| |||| |||| Sbjct 596493 TG-CCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056 |||| ||| ||| || || || ||| ||| | || | | | |||||| Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCAT 107114 | | || ||||| || ||| ||| ||||| | ||||| | | | | || || ||| Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTGAGGGTGTCAT 596317 Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174 | ||||| | || ||| ||||| || ||| |||||||||| |||| ||| | Sbjct 596316 AAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCT 596257 Query 107175 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACAT 107232 || |||||||| ||||| || || || | ||||| |||| || |||| |||||| Sbjct 596256 GGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA-GTA-CTTGCTGGACAT 596199 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 || ||| ||||| | || || ||||| || || ||| || | || ||||| Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACG 596139 Query 107293 CATAAACATGTATTGGGGTGTTTCCA 107318 ||| | ||| | || ||| | |||| Sbjct 596138 CATGATCATATGCTGTGGTCTCTCCA 596113 >seq7 Length=2827642 Score = 95.1 bits (104), Expect = 1e-14 Identities = 352/536 (66%), Gaps = 28/536 (5%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 |||||| |||||||| ||||| ||| || | || | || || | ||||||||| Sbjct 316957 ACGATCGAAGCGACCAGGACGCGTGAGGGCCTTGTCCAACATCTCGGGGAAATTCGTCGC 316898 Query 9251 GGCGATGACAACAATACCTGTTTCATT-ATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 | || | || || | || | | || ||||||||| |||| ||| || | ||||| | Sbjct 316897 ACCAATAATAATAACAT-TGCTGCTTTGATCAAAACCGTCCAGCTCAGTGAGTAGTTGAT 316839 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | | ||||| | ||| ||| || ||| | | | || | || | || | Sbjct 316838 TCAGGGTTTGCT-----TCA-CATAAGC-GGCGTCGCGC--GCGTTACGGCGGCCACCAA 316788 Query 9370 CGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGATTTCA 9425 |||||| | ||||||||||||| ||| || || ||| || || | | | Sbjct 316787 TGGCATCCAATTCATCAATGAAGATGATAGCAGGGGACTTGGACTTAGCAGCAG----CG 316732 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || ||||| ||||||| |||||||| ||||| || | | ||| |||| || || | Sbjct 316731 AAAAGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACC 316673 Query 9486 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 |||| | || ||| |||||| || || || |||| || || |||||||| ||||| Sbjct 316672 AGACATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTT 316613 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA--CTTCCA 9602 || ||||| || ||| | |||||| | ||| |||| |||| | ||| || | Sbjct 316612 TCCGGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGA 316553 Query 9603 AAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 9662 || | |||| | | |||| | ||||| || || || ||| | || || || || | Sbjct 316552 AAATTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCA 316495 Query 9663 TCAATCCCCTCAACATCGGTAAACCGGGTTTCAATTTCTTGTTCGGCATTGAACTC 9718 ||| ||| | |||||||| ||||| || | ||| ||||| || |||| ||| Sbjct 316494 TCACACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980571382440