Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 >seq11 Length=1453465 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 || |||||||| ||||| || | ||||| |||||| | || ||| || || | || Sbjct 1028900 ATCATGATTACTTATCCTAGCACGTACGGTGTCTTTGAACCTAAAGTCAAGAAAG-TGTG 1028958 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 | || | ||||| | | || || ||||| || | ||||| || ||| | || || || Sbjct 1028959 TGAGCTGGTTCACGCACACGGAGGGCAGGTTTACATGGATGGCGCCAATATGAACGCCCA 1029018 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | | || || ||| |||| || || ||||| || ||||| ||| | ||||| Sbjct 1029019 GATTGGACTCTGCTCCCCAGGTGAAATCGGCGCTGATGTCTGCCATCTCAACCTCCATAA 1029078 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| || || ||||| || ||||||||||| || || ||||| | ||| Sbjct 1029079 GACATTCTGCATCCCGCATGGCGGCGGAGGTCCTGGTGTGGGCCCTATCGCTGT 1029132 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 158447 GGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 158506 |||| || | || ||||| | || || ||||||||||| ||||| || || || | Sbjct 1027686 GGTTCGGCGTGCCAATGGGCTTTGGTGGCCCTCATGCTGCTTTCTTCGCGGTGACTGAAA 1027745 Query 158507 AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATA 158566 || | ||||||||||| ||||| || | || || | | | || || ||| | Sbjct 1027746 AGCACAAGAGAAAGATCCCTGGGAGGTTAGTTGGCCTGACTAAGGACCGCATGGGTCGCA 1027805 Query 158567 AAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCA 158626 ||||||| || | || | ||||| ||||||||||| ||| ||||||| || || || | Sbjct 1027806 AAGCATATCGACTGGCCTTGCAGACAAGAGAGCAGCACATCCGAAGAGAGAAGGCCACGA 1027865 Query 158627 GTAACATCTGCACAGCACAAGCACTGCTGGCTAATATG 158664 | ||| | || || | ||||| || |||| || ||| Sbjct 1027866 GCAACGTTTGTACGTCGCAAGCCTTGTTGGCCAACATG 1027903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050972130160