Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq4 156 9e-33
seq8 129 1e-24
seq3 113 1e-19
seq2 86.0 1e-11
>seq4
Length=3212107
Score = 156 bits (172), Expect = 9e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| |||||||| || |||||||| ||||| |||| || || | ||||| ||
Sbjct 2383407 ACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCC 2383348
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| | ||| |||||||| || || ||||| || |||||||||
Sbjct 2383347 AGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGA 2383288
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || || || |||||||||| |||||
Sbjct 2383287 ATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTG 2383228
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 2383227 CCAGTGAGGGTCTTGACGA 2383209
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || || | || |||||||| || || ||||| || ||||||| ||||| ||
Sbjct 2383636 AACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTC 2383577
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| |||||| || || ||||| | |||||||||||| |||||||| || || ||||| ||
Sbjct 2383576 CAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTG 2383517
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| ||||| || ||||| || || ||||| || | |||||
Sbjct 2383516 AATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTT 2383457
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| |||||||| || || || | ||||||
Sbjct 2383456 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
>seq8
Length=2477967
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||| ||| || || || ||||| |||| || || | || || |||
Sbjct 2273356 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 2273297
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || |||||||| || || |||||||| ||||| ||
Sbjct 2273296 AGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 2273237
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| ||| ||||| |||||||| | |||||
Sbjct 2273236 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 2273177
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 2273176 CCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148
>seq3
Length=5106013
Score = 113 bits (124), Expect = 1e-19
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| || || | ||||| || |||||||| || || |||||
Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| ||||||||||| ||||||||||| || ||||| || || || ||| || || ||
Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
|||||||| || ||||| || ||||| | ||||| || || | || || |||||
Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022
Query 195133 ACTTGCA 195139
| ||||
Sbjct 1583023 ATCTGCA 1583029
>seq2
Length=5746313
Score = 86.0 bits (94), Expect = 1e-11
Identities = 190/281 (68%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||| ||| |||||| | ||||||| |||||||| | || | | || || || |
Sbjct 596605 TTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGAAGAACGGAGAGT 596664
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | || |||||||| ||||| || | |||||||| || |||||||
Sbjct 596665 GGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACGGCGATGAGTTCG 596724
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAG--CCA-AAAAGGTCGTGAAGGCCC 160763
|| | || || || | ||||| ||||| ||| | | ||||| || |||||||
Sbjct 596725 AGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAAAAGATC---AAGGCCC 596781
Query 160764 AAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCAT 160823
| | || ||| || || || | ||||| |||| |||| || || || |
Sbjct 596782 AGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTAACCCTTTCATGCTCT 596841
Query 160824 ACAAGGA---TGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861
||||||| ||||| | |||||||||||||| ||||||
Sbjct 596842 ACAAGGACCATGCCAAC---CGCAAGAGTAACCAAAAGAAC 596879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481159327777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |