Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 156 9e-33 seq8 129 1e-24 seq3 113 1e-19 seq2 86.0 1e-11 >seq4 Length=3212107 Score = 156 bits (172), Expect = 9e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| |||||||| || |||||||| ||||| |||| || || | ||||| || Sbjct 2383407 ACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCC 2383348 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||| |||||||| || || ||||| || ||||||||| Sbjct 2383347 AGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGA 2383288 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || || || |||||||||| ||||| Sbjct 2383287 ATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTG 2383228 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 2383227 CCAGTGAGGGTCTTGACGA 2383209 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || | || |||||||| || || ||||| || ||||||| ||||| || Sbjct 2383636 AACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTC 2383577 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| | |||||||||||| |||||||| || || ||||| || Sbjct 2383576 CAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTG 2383517 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||| || ||||| || || ||||| || | ||||| Sbjct 2383516 AATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTT 2383457 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || || || | |||||| Sbjct 2383456 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 >seq8 Length=2477967 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| |||| || || | || || ||| Sbjct 2273356 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 2273297 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || |||||||| || || |||||||| ||||| || Sbjct 2273296 AGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 2273237 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| |||||||| | ||||| Sbjct 2273236 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 2273177 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 2273176 CCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148 >seq3 Length=5106013 Score = 113 bits (124), Expect = 1e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| || |||||||| || || ||||| Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || ||||||||||| ||||||||||| || ||||| || || || ||| || || || Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 |||||||| || ||||| || ||||| | ||||| || || | || || ||||| Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022 Query 195133 ACTTGCA 195139 | |||| Sbjct 1583023 ATCTGCA 1583029 >seq2 Length=5746313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||| ||| |||||| | ||||||| |||||||| | || | | || || || | Sbjct 596605 TTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGAAGAACGGAGAGT 596664 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| ||| | || |||||||| ||||| || | |||||||| || ||||||| Sbjct 596665 GGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACGGCGATGAGTTCG 596724 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAG--CCA-AAAAGGTCGTGAAGGCCC 160763 || | || || || | ||||| ||||| ||| | | ||||| || ||||||| Sbjct 596725 AGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAAAAGATC---AAGGCCC 596781 Query 160764 AAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCAT 160823 | | || ||| || || || | ||||| |||| |||| || || || | Sbjct 596782 AGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTAACCCTTTCATGCTCT 596841 Query 160824 ACAAGGA---TGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||||| ||||| | |||||||||||||| |||||| Sbjct 596842 ACAAGGACCATGCCAAC---CGCAAGAGTAACCAAAAGAAC 596879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481159327777