Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 6e-16 seq8 82.4 5e-11 >seq4 Length=3212107 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| |||||||| ||| | || | || || || || || ||| Sbjct 2383102 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2383043 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | || || ||||| |||| | ||||||||||| ||||| || Sbjct 2383042 GCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2382983 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | || || ||| || |||| || ||||| || || ||||| ||| Sbjct 2382982 ACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 2382923 Query 34965 TTCACAAAGATCTGCAT 34981 ||||| ||||||||||| Sbjct 2382922 TTCACGAAGATCTGCAT 2382906 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || |||| |||| |||| ||| || |||||||| Sbjct 2383617 TCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAG 2383558 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||| ||||| | || | ||||||||||| |||||| |||||| Sbjct 2383557 ATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG 2383498 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| ||||| || | |||||| ||| Sbjct 2383497 TCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACA 2383438 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 2383437 AAGATTTGCATA 2383426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||| ||||| ||| ||| ||||||||||| ||||| | |||| | || |||| | Sbjct 2383864 AACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGG-TACGGCCATCCT 2383806 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||| || || ||||| || || || || || || | || | || |||||||| Sbjct 2383805 CCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCT 2383746 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| |||||| | || | || | |||||| |||| ||| || || | Sbjct 2383745 GGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCT 2383686 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| | ||||| || |||||||||||| Sbjct 2383685 TTCCCGTCAATGTCTTGACGAAGATCTGCATA 2383654 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| || ||| | ||| |||| |||||||| || || || || Sbjct 2383390 TTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAA 2383331 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| || ||||| |||| | ||||||||||| ||||||| ||||| | Sbjct 2383330 GATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGAC--A 2383273 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | ||| || || | ||| ||||| || || ||||| |||| Sbjct 2383272 T--TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCT 2383215 Query 34966 TCAC 34969 | || Sbjct 2383214 TGAC 2383211 >seq8 Length=2477967 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| | || | || || ||||| || ||| Sbjct 2273344 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2273285 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | || || ||||| |||| | || |||||||| ||||| ||| Sbjct 2273284 GCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 2273225 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | ||| || || | ||| || || || |||||||| Sbjct 2273224 AC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 2273169 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 2273168 GGTCTTGACGAAGATCTGCAT 2273148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633477349368