Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 6e-16
seq8 82.4 5e-11
>seq4
Length=3212107
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| ||||| |||||||| ||| | || | || || || || || |||
Sbjct 2383102 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2383043
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || | || || ||||| |||| | ||||||||||| ||||| ||
Sbjct 2383042 GCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2382983
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | || || ||| || |||| || ||||| || || ||||| |||
Sbjct 2382982 ACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 2382923
Query 34965 TTCACAAAGATCTGCAT 34981
||||| |||||||||||
Sbjct 2382922 TTCACGAAGATCTGCAT 2382906
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| ||||| || |||| |||| |||| ||| || ||||||||
Sbjct 2383617 TCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAG 2383558
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | |||||| ||||| | || | ||||||||||| |||||| ||||||
Sbjct 2383557 ATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG 2383498
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | || ||||| ||||| || | |||||| |||
Sbjct 2383497 TCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACA 2383438
Query 34971 AAGATCTGCATA 34982
||||| ||||||
Sbjct 2383437 AAGATTTGCATA 2383426
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830
||||| ||||| ||| ||| ||||||||||| ||||| | |||| | || |||| |
Sbjct 2383864 AACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGG-TACGGCCATCCT 2383806
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
||| ||| || || ||||| || || || || || || | || | || ||||||||
Sbjct 2383805 CCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCT 2383746
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| |||||| | || | || | |||||| |||| ||| || || |
Sbjct 2383745 GGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCT 2383686
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||||| | ||||| || ||||||||||||
Sbjct 2383685 TTCCCGTCAATGTCTTGACGAAGATCTGCATA 2383654
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/184 (71%), Gaps = 8/184 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || |||||||| ||||| || ||| | ||| |||| |||||||| || || || ||
Sbjct 2383390 TTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAA 2383331
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | ||| || ||||| |||| | ||||||||||| ||||||| ||||| |
Sbjct 2383330 GATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGAC--A 2383273
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || | ||| || || | ||| ||||| || || ||||| ||||
Sbjct 2383272 T--TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCT 2383215
Query 34966 TCAC 34969
| ||
Sbjct 2383214 TGAC 2383211
>seq8
Length=2477967
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| ||||| ||||| || ||| | || | || || ||||| || |||
Sbjct 2273344 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2273285
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || | || || ||||| |||| | || |||||||| ||||| |||
Sbjct 2273284 GCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 2273225
Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| || | ||| || || | ||| || || || ||||||||
Sbjct 2273224 AC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 2273169
Query 34961 AGTCTTCACAAAGATCTGCAT 34981
||||| || |||||||||||
Sbjct 2273168 GGTCTTGACGAAGATCTGCAT 2273148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633477349368
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