Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 1e-21
>seq2
Length=5746313
Score = 118 bits (130), Expect = 1e-21
Identities = 433/678 (64%), Gaps = 0/678 (0%)
Strand=Plus/Minus
Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184
||| || ||||| || || |||| | | ||||| || ||||| || ||||| | |
Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667
Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244
||| || | | || | || | |||| || | ||| || ||||| || || | ||
Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| ||| | || | | ||||| || ||| ||| || || || || || || |
Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
| ||| | ||||| || || | ||| || || | |||| ||||| || || || ||
Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
||| || | |||| ||||| ||||| | || | | ||| || ||||||||||| ||
Sbjct 596486 TTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA 596427
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484
| |||| ||||| || | |||||| || | || | ||| || | |||
Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACC 596367
Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544
|||||||| ||||| || || || | || || || ||||| |||||||| || ||
Sbjct 596366 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATC 596307
Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604
|| || ||||| |||| | | || || ||| |||| || | || || ||
Sbjct 596306 AATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACC 596247
Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664
| || || | || ||||| || || | || | || || | | || || ||
Sbjct 596246 AGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGT 596187
Query 48665 TTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATA 48724
|||||||| || || || | ||||| | || |||||||| | |||||
Sbjct 596186 CTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATG 596127
Query 48725 TTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTT 48784
|| ||||| || ||||| ||| ||| | |||| ||||||||| ||||| || ||
Sbjct 596126 CTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTT 596067
Query 48785 AAAACCAAAATAGTTGTA 48802
|| || || || | |||
Sbjct 596066 GAAGCCGAAGTATTGGTA 596049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108582182840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |