Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=5746313 Score = 118 bits (130), Expect = 1e-21 Identities = 433/678 (64%), Gaps = 0/678 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| || || |||| | | ||||| || ||||| || ||||| | | Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | || | || | |||| || | ||| || ||||| || || | || Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | || | | ||||| || ||| ||| || || || || || || | Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| | ||||| || || | ||| || || | |||| ||||| || || || || Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||| || | |||| ||||| ||||| | || | | ||| || ||||||||||| || Sbjct 596486 TTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA 596427 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | |||| ||||| || | |||||| || | || | ||| || | ||| Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACC 596367 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| ||||| || || || | || || || ||||| |||||||| || || Sbjct 596366 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATC 596307 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || || ||||| |||| | | || || ||| |||| || | || || || Sbjct 596306 AATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACC 596247 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | || || | || ||||| || || | || | || || | | || || || Sbjct 596246 AGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGT 596187 Query 48665 TTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATA 48724 |||||||| || || || | ||||| | || |||||||| | ||||| Sbjct 596186 CTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATG 596127 Query 48725 TTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTT 48784 || ||||| || ||||| ||| ||| | |||| ||||||||| ||||| || || Sbjct 596126 CTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTT 596067 Query 48785 AAAACCAAAATAGTTGTA 48802 || || || || | ||| Sbjct 596066 GAAGCCGAAGTATTGGTA 596049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108582182840