Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 159 3e-34 >seq1 Length=5759619 Score = 159 bits (176), Expect = 3e-34 Identities = 424/655 (65%), Gaps = 52/655 (8%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||||| | | ||||| | ||||| || ||||| ||| ||| ||||| ||||| Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489 Query 29839 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| ||| Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 || || | |||||| |||||||| || || ||||| ||||||||||| | | ||| Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTGCGCTG 2010370 Query 29958 GTAGAGCTGACACGAGAGCT-------------------------------CTCCGTCGC 29986 ||| ||||| || || | | ||||||| Sbjct 2010369 GTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTCGTCGTCGTCGCCGCCCCCGTCGC 2010310 Query 29987 T-----------------CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||||| ||||| | |||||||||| || || ||||| Sbjct 2010309 CGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCAT 2010250 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 ||||| ||| |||||||| |||| || | |||||||| ||| | ||| | | Sbjct 2010249 CTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGATGCGCCGGTCGTACGGGCTCGT 2010190 Query 30090 CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 30149 || | || ||| | | |||||| || || ||| |||| |||||| | | Sbjct 2010189 CCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCCCTGGCCCGCGTAGTCGGTCGC 2010130 Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 | |||| |||| | || ||||| |||| ||||||||||||||||||||| |||||||| Sbjct 2010129 CGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAACCCGTACACCGGGCCCAGGTC 2010070 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||| | ||| ||| | | ||||| | |||||| || || | || |||||| ||| Sbjct 2010069 CCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGAACTCGCGCGACCCGTTGCCGT 2010011 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||||||||| ||||| |||| |||| | || ||| || ||||||| Sbjct 2010010 CCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACGACGTGTTGCCCGCCACGAACC 2009951 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||||||||| |||| || ||| | || |||| |||||| || || || || Sbjct 2009950 ACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCTTGGTGGTCAGCAGCGG 2009896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617445619163