Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 367 2e-96 >seq2 Length=5746313 Score = 367 bits (406), Expect = 2e-96 Identities = 1149/1746 (66%), Gaps = 74/1746 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | || || |||| |||||| || ||||||||||| ||||| Sbjct 597880 ACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTC 597821 Query 212613 AGGCCCTTGCC-CCAGCC-GTGCATGTGCATTGCT-GTGAGTTTCTTCAGCTTAATATTC 212669 ||||| | || |||||| ||| | |||||| ||| |||| |||| | || | Sbjct 597820 AGGCC-TAGCTTCCAGCCCGTGAA-GTGCAT-GCTCGTGA---TCTTGCCC---ATGGTG 597770 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| || | || || | ||||| ||||| ||||| ||||| | | Sbjct 597769 GGGTC--CCGCATG-------TGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCA 597719 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| || ||||| | | | || ||| |||| |||||||||||||||| | | Sbjct 597718 CGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGG 597659 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTC 212846 | |||| ||| | || | | ||| |||||||| | || || ||| | | || | Sbjct 597658 GCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATA 597599 Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906 | | | ||||| ||| ||| || ||| || | ||| ||| | ||| Sbjct 597598 CGATTCTT---CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAG 597542 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | ||| | ||| || || ||| Sbjct 597541 GGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAG 597482 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| | ||||||||| ||||| ||||| | || ||||| |||||||| |||||| Sbjct 597481 GGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCC 597422 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGAAGCTCTGCCCAGTC 213085 | || |||||||| | || || | || ||| | | || ||||| ||||||| Sbjct 597421 ATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCT-CCCAGTC 597363 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| | |||| || | |||||||||||||| | || | ||| || | Sbjct 597362 CCAAAGGTCAGATGGGG---------TGACGTTCCACATGTCGTATTGTAGGATACCCTG 597312 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | || || ||||| ||| | ||||||||| || ||||||||||| | ||| ||| Sbjct 597311 GGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGA 597252 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || |||| | | ||| ||||| || || |||| | ||||||||| | | ||||| Sbjct 597251 AGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTC 597192 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| ||| ||||| | | | | || ||||||| || || ||||| |||| Sbjct 597191 GGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAG 597132 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||||||||| | ||||| || ||| ||| | || ||| | | ||||| ||||| Sbjct 597131 GCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGC-CTCTTGAACAGGGTAGTAGTTGA 597073 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTG-GTGACATGGGCCAGGTACTCG 213443 || ||||||||||| |||||||| | | | || ||||| | | ||| | || Sbjct 597072 CATCAATGATCTTGTTCAGGTTGCGCACAAC-AGTCTGCGTGACGTCGTGCAGCTTCT-- 597016 Query 213444 TGATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCC 213497 || || | ||| | || || | || ||| ||||| || | |||| Sbjct 597015 -GA---AAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCC 596960 Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 | ||||| ||||| ||||| | || | | ||| || |||||||||||||| || || Sbjct 596959 AAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTA 596900 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCG-TTGGCAGAATCCTTGT 213615 || ||||||||||||||||||| ||||| ||| ||||| |||||| ||||||| Sbjct 596899 GAGCTGCGGATGGTGCCCAGGTTCTTTTGGTT--ACTCTTGCGGTTGGCATGGTCCTTGT 596842 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 |||||||| | ||| || ||||| ||||| | |||| || |||||| | | Sbjct 596841 AGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCT 596782 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 |||||||| | | | ||| ||| | | |||||||||| |||||||| | | Sbjct 596781 GGGCCTTGATCTTTTGTC-GAC--CTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCT 596725 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| | || | |||| || || || ||| ||||| || ||| Sbjct 596724 CGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCC 596665 Query 213796 AGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 | || ||| || |||| || | | |||||| || || || | ||| || || ||| Sbjct 596664 ACTCTCCGTTCTTCTC-AACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAA 596606 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || || | | | ||| || ||| ||| || || ||||| || || |||||| Sbjct 596605 AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAG 596546 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCC 213971 | || | |||||| ||||| | ||||| |||||||| || | || | ||||| || Sbjct 596545 ACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCT 596486 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 ||||| || | || ||||||| | ||| || | ||| || | || ||||| Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA- 596427 Query 214032 TGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATGGAGAG 214087 ||| |||||||| || || ||||| ||||||| || | | ||| | ||| ||| Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGG---ATGTTGAG 596370 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || |||||||| |||||||||||||||||| | | | || || || || Sbjct 596369 ACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACC 596310 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | ||||||||||| | | || | | |||||| || ||||| | | || || Sbjct 596309 ATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGT 596250 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 |||| |||||| || || || ||| || | | ||||| | || | ||| |||| Sbjct 596249 ACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTA 596190 Query 214268 GGTCTC 214273 ||||| Sbjct 596189 AGTCTC 596184 Score = 141 bits (156), Expect = 2e-28 Identities = 350/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 3731688 CTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTC 3731629 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | | |||||| | || ||| | | | || | Sbjct 3731628 CATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCT-TCTCGTTGCCGA---GAGCAAGGA 3731573 Query 47958 GGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || || ||||| || |||| ||||||| ||||||| || |||||| || | | Sbjct 3731572 GGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCA 3731513 Query 48015 GGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 ||| || ||| | |||| ||| | ||||| | ||| || || || || | Sbjct 3731512 GGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGATG 3731454 Query 48074 ATCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATG 48130 |||| || || || ||| || | || || |||||| || | |||| | Sbjct 3731453 ATCTTCTGGACCTTCTCCTTGCTGGGGCGATTCTT---CAGGTG---GGAGAACAGCAGG 3731400 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||| | ||| ||||| || ||| | | ||||||||||| || Sbjct 3731399 CAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGG 3731340 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | || ||||||||||| || | ||||| | || ||||||| Sbjct 3731339 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 3731280 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||| ||| | | | | || | | | |||||| | | Sbjct 3731279 ATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGTG 3731220 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | ||| ||||| || |||||| | |||||| || Sbjct 3731219 ATCCAAGTAAGGGCCCACTCGGCCTTCCTTCGGATGCAAGG 3731179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532439031040