Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 367 2e-96
>seq2
Length=5746313
Score = 367 bits (406), Expect = 2e-96
Identities = 1149/1746 (66%), Gaps = 74/1746 (4%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || | || || |||| |||||| || ||||||||||| |||||
Sbjct 597880 ACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTC 597821
Query 212613 AGGCCCTTGCC-CCAGCC-GTGCATGTGCATTGCT-GTGAGTTTCTTCAGCTTAATATTC 212669
||||| | || |||||| ||| | |||||| ||| |||| |||| | || |
Sbjct 597820 AGGCC-TAGCTTCCAGCCCGTGAA-GTGCAT-GCTCGTGA---TCTTGCCC---ATGGTG 597770
Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729
|||| || | || || | ||||| ||||| ||||| ||||| | |
Sbjct 597769 GGGTC--CCGCATG-------TGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCA 597719
Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789
| ||| || ||||| | | | || ||| |||| |||||||||||||||| | |
Sbjct 597718 CGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGG 597659
Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTC 212846
| |||| ||| | || | | ||| |||||||| | || || ||| | | || |
Sbjct 597658 GCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATA 597599
Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906
| | | ||||| ||| ||| || ||| || | ||| ||| | |||
Sbjct 597598 CGATTCTT---CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAG 597542
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
|||||||| | |||||| || || | || || | | ||| | ||| || || |||
Sbjct 597541 GGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAG 597482
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
||||||| | ||||||||| ||||| ||||| | || ||||| |||||||| ||||||
Sbjct 597481 GGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCC 597422
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGAAGCTCTGCCCAGTC 213085
| || |||||||| | || || | || ||| | | || ||||| |||||||
Sbjct 597421 ATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCT-CCCAGTC 597363
Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145
||| | |||| || | |||||||||||||| | || | ||| || |
Sbjct 597362 CCAAAGGTCAGATGGGG---------TGACGTTCCACATGTCGTATTGTAGGATACCCTG 597312
Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205
| || || ||||| ||| | ||||||||| || ||||||||||| | ||| |||
Sbjct 597311 GGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGA 597252
Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265
|| || |||| | | ||| ||||| || || |||| | ||||||||| | | |||||
Sbjct 597251 AGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTC 597192
Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325
|| ||| ||| ||||| | | | | || ||||||| || || ||||| ||||
Sbjct 597191 GGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAG 597132
Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384
||||||||| | ||||| || ||| ||| | || ||| | | ||||| |||||
Sbjct 597131 GCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGC-CTCTTGAACAGGGTAGTAGTTGA 597073
Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTG-GTGACATGGGCCAGGTACTCG 213443
|| ||||||||||| |||||||| | | | || ||||| | | ||| | ||
Sbjct 597072 CATCAATGATCTTGTTCAGGTTGCGCACAAC-AGTCTGCGTGACGTCGTGCAGCTTCT-- 597016
Query 213444 TGATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCC 213497
|| || | ||| | || || | || ||| ||||| || | ||||
Sbjct 597015 -GA---AAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCC 596960
Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557
| ||||| ||||| ||||| | || | | ||| || |||||||||||||| || ||
Sbjct 596959 AAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTA 596900
Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCG-TTGGCAGAATCCTTGT 213615
|| ||||||||||||||||||| ||||| ||| ||||| |||||| |||||||
Sbjct 596899 GAGCTGCGGATGGTGCCCAGGTTCTTTTGGTT--ACTCTTGCGGTTGGCATGGTCCTTGT 596842
Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675
|||||||| | ||| || ||||| ||||| | |||| || |||||| | |
Sbjct 596841 AGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCT 596782
Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735
|||||||| | | | ||| ||| | | |||||||||| |||||||| | |
Sbjct 596781 GGGCCTTGATCTTTTGTC-GAC--CTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCT 596725
Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795
||| || | ||| | || | |||| || || || ||| ||||| || |||
Sbjct 596724 CGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCC 596665
Query 213796 AGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854
| || ||| || |||| || | | |||||| || || || | ||| || || |||
Sbjct 596664 ACTCTCCGTTCTTCTC-AACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAA 596606
Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914
|| || | | | ||| || ||| ||| || || ||||| || || ||||||
Sbjct 596605 AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAG 596546
Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCC 213971
| || | |||||| ||||| | ||||| |||||||| || | || | ||||| ||
Sbjct 596545 ACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCT 596486
Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031
||||| || | || ||||||| | ||| || | ||| || | || |||||
Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGA- 596427
Query 214032 TGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATGGAGAG 214087
||| |||||||| || || ||||| ||||||| || | | ||| | ||| |||
Sbjct 596426 TGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGG---ATGTTGAG 596370
Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147
|| || |||||||| |||||||||||||||||| | | | || || || ||
Sbjct 596369 ACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACC 596310
Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207
| ||||||||||| | | || | | |||||| || ||||| | | || ||
Sbjct 596309 ATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGT 596250
Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267
|||| |||||| || || || ||| || | | ||||| | || | ||| ||||
Sbjct 596249 ACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTA 596190
Query 214268 GGTCTC 214273
|||||
Sbjct 596189 AGTCTC 596184
Score = 141 bits (156), Expect = 2e-28
Identities = 350/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || ||||| | |||||||||||||| ||||| || ||| |||||||||||
Sbjct 3731688 CTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTC 3731629
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||||||| ||||||||||| | | |||||| | || ||| | | | || |
Sbjct 3731628 CATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCT-TCTCGTTGCCGA---GAGCAAGGA 3731573
Query 47958 GGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
|| || ||||| || |||| ||||||| ||||||| || |||||| || | |
Sbjct 3731572 GGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCA 3731513
Query 48015 GGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073
||| || ||| | |||| ||| | ||||| | ||| || || || || |
Sbjct 3731512 GGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGATG 3731454
Query 48074 ATCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATG 48130
|||| || || || ||| || | || || |||||| || | |||| |
Sbjct 3731453 ATCTTCTGGACCTTCTCCTTGCTGGGGCGATTCTT---CAGGTG---GGAGAACAGCAGG 3731400
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|| |||||||| |||| | ||| ||||| || ||| | | ||||||||||| ||
Sbjct 3731399 CAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGG 3731340
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|||||||| | || | || ||||||||||| || | ||||| | || |||||||
Sbjct 3731339 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 3731280
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310
|| ||||| || || ||||| ||| | | | | || | | | |||||| | |
Sbjct 3731279 ATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGTG 3731220
Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||| | ||| ||||| || |||||| | |||||| ||
Sbjct 3731219 ATCCAAGTAAGGGCCCACTCGGCCTTCCTTCGGATGCAAGG 3731179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532439031040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |