Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 251 1e-61
>seq2
Length=5746313
Score = 251 bits (278), Expect = 1e-61
Identities = 840/1282 (66%), Gaps = 55/1282 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|||| |||| | ||||| |||||||| |||||| ||||||||| | | |||||||||
Sbjct 597247 GTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGA 597188
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| ||| ||||| || || |||| | || || || || || || |||| |||
Sbjct 597187 GACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCG 597128
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||||| | ||||| | ||| ||| ||| | || || || ||||||| |
Sbjct 597127 ATGGGACGGTGTCGCATGTTGCTGTTGCG--CGCCTCTTGAACAGGGTAGTAGTTGACAT 597070
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACC---ACCTCGGTCAGCTTCTGGT 221651
| || | ||||| ||||| | | || | | || ||| |||||||||
Sbjct 597069 CAATGATCTTGTTCAGGTTGCGC---ACAACAGTCTGCGTGACGTCGTGCAGCTTCTG-- 597015
Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
|| || | | |||| | || | | || || || | | || || |
Sbjct 597014 -----AAAGTCA--TAGACGCCCTGGTTGTAG---TCGACGAACGAGGGCAGAGCCAGAG 596965
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCT-TGTTG-GTATACTGTATGATCTCTGTACA 221769
||||| || || ||||| ||||| || || | |||| | |||||||| || ||
Sbjct 596964 AGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCA--ATGATCTCGGTGCA 596907
Query 221770 GAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826
||| || ||||| |||||| ||||||| || || ||| |||||| ||||||
Sbjct 596906 GAGATTAGAGCTGCG---GATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG 596850
Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886
||||||||||||||| || || |||||||| ||| ||| ||||||| | |||
Sbjct 596849 GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCA 596790
Query 221887 GAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTAT 221945
||| | ||||| || | | | ||| | ||||||| || | | | || |
Sbjct 596789 GAGCT-TCTGGGCCTTGATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCG---T 596734
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
|||| || |||| || ||||| | ||| ||||||| || ||| ||| ||||
Sbjct 596733 AGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACA 596674
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
| || |||| | ||| | | || | | ||||||||| || || ||||| || |
Sbjct 596673 TAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGG 596614
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | || ||||| | | || ||| || || | ||| || | ||||||| |
Sbjct 596613 CAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGA 596554
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
||||||| | || | |||||| ||||| ||||||| || | || || ||||||||||
Sbjct 596553 ACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGT 596494
Query 222186 TGCCACCCTGATCCACC-ATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAG 222243
||||||| || || || ||| ||| | |||||| | |||||| | || || |
Sbjct 596493 TGCCACCTTGGTCGACGTATCGAG--CAGTGTTGTTGAACACGCGAAGCATGGGAACAAT 596436
Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG 222301
|| |||||| ||||||||| || || || | ||| || | | ||| ||
Sbjct 596435 ACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAA---TACGGTG 596379
Query 222302 GCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360
| | | |||||||||||||| || |||||||||||||| ||||||| |||||
Sbjct 596378 GATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC 596319
Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420
|| || || || ||| ||||| | || | || || ||||| |||| |||||
Sbjct 596318 ATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGC 596259
Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480
| || | || ||||| ||||| || ||| ||||||||| ||||| || |||||
Sbjct 596258 CTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACAT 596199
Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTGCATGGCGCAT 222538
|| | ||| ||||| | || || |||||| ||| ||| || | | || ||
Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACA--GCAACA 596141
Query 222539 CTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACG 222596
| |||| ||| | ||| || ||||||||| || | |||| || || || |
Sbjct 596140 CGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT--TCAGGAGATATG 596083
Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656
|| |||| ||||||||| || ||||| | | || ||||| | | ||| || | ||
Sbjct 596082 ATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGG 596023
Query 222657 CGGCGTCCAGCTCCGACTTGTG 222678
||| ||| || ||| ||||||
Sbjct 596022 CGGAGTCGAGGTCCTCCTTGTG 596001
Score = 149 bits (164), Expect = 1e-30
Identities = 341/514 (66%), Gaps = 15/514 (3%)
Strand=Plus/Plus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872
||||| |||||||| ||||||| | | ||||||| | | || | | | || |||
Sbjct 3731183 GCATCCGAAGGAAGGCCGAGTGGGCCCTTACTTGGATCA-CTGACAAGGAGTCAACCTTT 3731241
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| | || |||| ||||| |||||||| ||||| ||||| ||||||||| | || ||
Sbjct 3731242 GCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCC 3731301
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
||||||||||||||||| || || ||||| || ||| ||| ||||||||| |
Sbjct 3731302 TCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTG 3731361
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052
||| | |||||||| || |||| || ||||| |||||||| | | | ||||
Sbjct 3731362 ATCTCGCGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTC---CCAC--- 3731415
Query 26053 CTCCACAA--ACCTTCTCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109
|| | || || ||| |||| ||| | | ||||||| || ||||| | ||
Sbjct 3731416 CTGAAGAATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATT 3731475
Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169
||| | ||||| |||| |||||| || |||
Sbjct 3731476 GAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTC 3731535
Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCA 26227
|||| ||||||||||||| ||| || |||| ||| || ||| || || || |
Sbjct 3731536 ATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGC--TCTCGGCAACGAGA 3731593
Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287
| ||| | | | ||||| |||||||| ||||| ||||| || ||| ||| ||||
Sbjct 3731594 AGGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGA 3731653
Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||||||||||| ||| | || ||||| || ||
Sbjct 3731654 CCAACTTCTTTGAGAAGCGCGTGGGCGAATACCA 3731687
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| ||||| ||||| || || | || || | | ||| | ||| || || | ||
Sbjct 597539 GTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGG 597480
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| | ||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 597479 CTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCAT 597420
Query 221236 CAGCAGACTGTTGCG 221250
|| ||||||||||||
Sbjct 597419 CAACAGACTGTTGCG 597405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844440072640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |