Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 251 1e-61 >seq2 Length=5746313 Score = 251 bits (278), Expect = 1e-61 Identities = 840/1282 (66%), Gaps = 55/1282 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| |||| | ||||| |||||||| |||||| ||||||||| | | ||||||||| Sbjct 597247 GTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGA 597188 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| ||||| || || |||| | || || || || || || |||| ||| Sbjct 597187 GACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCG 597128 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||||| | ||||| | ||| ||| ||| | || || || ||||||| | Sbjct 597127 ATGGGACGGTGTCGCATGTTGCTGTTGCG--CGCCTCTTGAACAGGGTAGTAGTTGACAT 597070 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACC---ACCTCGGTCAGCTTCTGGT 221651 | || | ||||| ||||| | | || | | || ||| ||||||||| Sbjct 597069 CAATGATCTTGTTCAGGTTGCGC---ACAACAGTCTGCGTGACGTCGTGCAGCTTCTG-- 597015 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 || || | | |||| | || | | || || || | | || || | Sbjct 597014 -----AAAGTCA--TAGACGCCCTGGTTGTAG---TCGACGAACGAGGGCAGAGCCAGAG 596965 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCT-TGTTG-GTATACTGTATGATCTCTGTACA 221769 ||||| || || ||||| ||||| || || | |||| | |||||||| || || Sbjct 596964 AGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCA--ATGATCTCGGTGCA 596907 Query 221770 GAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 ||| || ||||| |||||| ||||||| || || ||| |||||| |||||| Sbjct 596906 GAGATTAGAGCTGCG---GATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG 596850 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 ||||||||||||||| || || |||||||| ||| ||| ||||||| | ||| Sbjct 596849 GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCA 596790 Query 221887 GAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTAT 221945 ||| | ||||| || | | | ||| | ||||||| || | | | || | Sbjct 596789 GAGCT-TCTGGGCCTTGATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCG---T 596734 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 |||| || |||| || ||||| | ||| ||||||| || ||| ||| |||| Sbjct 596733 AGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACA 596674 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||| | ||| | | || | | ||||||||| || || ||||| || | Sbjct 596673 TAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGG 596614 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || ||||| | | || ||| || || | ||| || | ||||||| | Sbjct 596613 CAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGA 596554 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || | |||||| ||||| ||||||| || | || || |||||||||| Sbjct 596553 ACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGT 596494 Query 222186 TGCCACCCTGATCCACC-ATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||||| || || || ||| ||| | |||||| | |||||| | || || | Sbjct 596493 TGCCACCTTGGTCGACGTATCGAG--CAGTGTTGTTGAACACGCGAAGCATGGGAACAAT 596436 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG 222301 || |||||| ||||||||| || || || | ||| || | | ||| || Sbjct 596435 ACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAA---TACGGTG 596379 Query 222302 GCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | | |||||||||||||| || |||||||||||||| ||||||| ||||| Sbjct 596378 GATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC 596319 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 || || || || ||| ||||| | || | || || ||||| |||| ||||| Sbjct 596318 ATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGC 596259 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | || | || ||||| ||||| || ||| ||||||||| ||||| || ||||| Sbjct 596258 CTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACAT 596199 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTGCATGGCGCAT 222538 || | ||| ||||| | || || |||||| ||| ||| || | | || || Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACA--GCAACA 596141 Query 222539 CTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACG 222596 | |||| ||| | ||| || ||||||||| || | |||| || || || | Sbjct 596140 CGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT--TCAGGAGATATG 596083 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || |||| ||||||||| || ||||| | | || ||||| | | ||| || | || Sbjct 596082 ATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGG 596023 Query 222657 CGGCGTCCAGCTCCGACTTGTG 222678 ||| ||| || ||| |||||| Sbjct 596022 CGGAGTCGAGGTCCTCCTTGTG 596001 Score = 149 bits (164), Expect = 1e-30 Identities = 341/514 (66%), Gaps = 15/514 (3%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872 ||||| |||||||| ||||||| | | ||||||| | | || | | | || ||| Sbjct 3731183 GCATCCGAAGGAAGGCCGAGTGGGCCCTTACTTGGATCA-CTGACAAGGAGTCAACCTTT 3731241 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | || |||| ||||| |||||||| ||||| ||||| ||||||||| | || || Sbjct 3731242 GCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCC 3731301 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||||||| || || ||||| || ||| ||| ||||||||| | Sbjct 3731302 TCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTG 3731361 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | |||||||| || |||| || ||||| |||||||| | | | |||| Sbjct 3731362 ATCTCGCGTGACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTC---CCAC--- 3731415 Query 26053 CTCCACAA--ACCTTCTCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 || | || || ||| |||| ||| | | ||||||| || ||||| | || Sbjct 3731416 CTGAAGAATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATT 3731475 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||| | ||||| |||| |||||| || ||| Sbjct 3731476 GAGCAAGAGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTC 3731535 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCA 26227 |||| ||||||||||||| ||| || |||| ||| || ||| || || || | Sbjct 3731536 ATGAAGCAATACATTGAGTTTGTTGCGGACCGTCTCCTCCTTGC--TCTCGGCAACGAGA 3731593 Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 | ||| | | | ||||| |||||||| ||||| ||||| || ||| ||| |||| Sbjct 3731594 AGGTGTACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGA 3731653 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||||| ||| | || ||||| || || Sbjct 3731654 CCAACTTCTTTGAGAAGCGCGTGGGCGAATACCA 3731687 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| || || | || || | | ||| | ||| || || | || Sbjct 597539 GTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGG 597480 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| | ||||||||||||||||||||||| || ||||| |||||||| || |||| Sbjct 597479 CTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCAT 597420 Query 221236 CAGCAGACTGTTGCG 221250 || |||||||||||| Sbjct 597419 CAACAGACTGTTGCG 597405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844440072640