Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 102 5e-16 >seq4 Length=3212107 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| | ||| ||||| | || || ||| ||||| Sbjct 2383648 ACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGT 2383589 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| || | ||||| || ||||| || | |||||||| ||||||||||| || Sbjct 2383588 TCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACC 2383529 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||| ||||||||||| | || | || |||| Sbjct 2383528 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAA-CCTCAA 2383470 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| | |||||| || || ||||| Sbjct 2383469 GCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTG 2383430 Score = 96.9 bits (106), Expect = 2e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || |||||||| ||| || || || || || ||| || Sbjct 2383876 ACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTC-GCTCAAGG 2383818 Query 480611 T-CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || | ||||| |||||||| |||||||| |||||||| || ||||| | Sbjct 2383817 TACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATAC 2383758 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 |||||||||| || ||||| ||||| ||||||||||| | | | || || Sbjct 2383757 CTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAA-CCTCG 2383699 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || | ||||| ||||| || || Sbjct 2383698 AGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTG 2383658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177870259588