Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=5746313 Score = 221 bits (244), Expect = 1e-52 Identities = 1016/1586 (64%), Gaps = 33/1586 (2%) Strand=Plus/Plus Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 |||| | |||||| | ||| ||||||| || || | || ||| || || ||||| | Sbjct 596113 TGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCG 596172 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | || | ||||| ||| || |||||| |||| || |||| ||||| | || Sbjct 596173 AGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAG-TAC-TTCACACACGCCTCTCC 596230 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 || || ||||| |||||||| || | ||| |||| |||||||||| ||| || Sbjct 596231 TACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACAT 596290 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCA 75439 ||||| ||| || | ||||| |||| || || | | | | ||||| | ||||| Sbjct 596291 GAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAG-ACT-TGCGCCATGATCTCC 596348 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499 ||| ||| || ||||| || | ||||||| | | | || | ||| ||| Sbjct 596349 AAGATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATC 596408 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || || ||| ||| |||||||| |||| ||||||||||| || ||| ||| Sbjct 596409 GCCGGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACT 596468 Query 75560 GCGCGCTATGTAAATCAAGCGGGGCGTC--GCAA--GGGGTCCATCGCGGTCTACTTGGA 75615 || || || || | |||| | ||| | || | || || | || |||| | || Sbjct 596469 GCTCGATACGTCGACCAAG-GTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGA 596527 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| ||||| || | |||||||| || | ||| ||||| ||| | ||||| Sbjct 596528 GCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGA 596587 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 || || | | ||||| ||| | | |||| |||||||| || || |||||||| || | Sbjct 596588 GGTCCGCGCTCGCGATCT-TTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTG 596646 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 ||||| || || | ||| | ||| | || || | || || || || |||| | Sbjct 596647 TTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATG 596706 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGA-GCCAAT 75853 || || ||||| || ||||||||| ||||| || | ||||| || | | | Sbjct 596707 TTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGA- 596765 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 | | | | || | | || | | ||| | |||||||| | | ||||| |||||||| Sbjct 596766 -CAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGG 596824 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 | || | ||||| |||||||| | ||| ||||||||||||||||| |||| Sbjct 596825 TAACCCTTTCATGCTCTACAAGGACCATGCCAACCGCAAGAGTAACCAAAAGAACCTGGG 596884 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || ||| ||||| ||||| ||||| || || | || ||| | | |||||| Sbjct 596885 CACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGT 596944 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 || || ||||||||||| || | || || || || ||| | | | || Sbjct 596945 CGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGACTACAACCAGGGCGT 597004 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | | || || || || |||| ||| |||| || || ||| | Sbjct 597005 CTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCAACCTGAACAAGAT 597064 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||||| || | || || ||| | ||||| || || ||||||||| | || Sbjct 597065 CATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAACATGCGACACCGTCC 597124 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTT-G 76271 || || | ||||| |||||||| || |||| ||| | |||| | || ||| | Sbjct 597125 CATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTCTAGCCCTCCGC-ATGCCTTTCG 597183 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || || || | | || | || | ||||| || ||||| || || | || Sbjct 597184 AGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGACCATTTACCATGGTGCCT 597243 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 || || || | || | | ||||| |||| || | ||||| || | Sbjct 597244 TGACAGCTTCCATGGAGATCGCCAAGGAGCAAGGACCCTACTCCACCTACGAGGGCTCAC 597303 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TA 76449 | | ||||| || | || || | || |||| |||| || | || | || | | | Sbjct 597304 CTGTCTCCCAGGGTATCCTACAATACGACATGT-GGAACGT-CACCCCATCTGACCTTTG 597361 Query 76450 CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 76509 |||||||| ||||| || | |||||| |||| ||| | || |||||||| ||||| Sbjct 597362 GGACTGGGAGAGCCTCAAAGAGCAGATCAAGCAGAATGGTGTCCGCAACAGTCTGTTGAT 597421 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||| || ||||| || ||| || | || ||| |||| || || || || || || || Sbjct 597422 GGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAACAACGAGTGTTTCGAGCC 597481 Query 76570 ATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAA 76629 || ||| | ||||||||| | | ||| || || ||||| | |||||| Sbjct 597482 CTATACATCCAACATCTACTCTCGTCGTGTCCTAGCTGGCGAGTTCCAGGTGGTCAACCC 597541 Query 76630 GCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---T 76686 || | || |||||| | || ||||| |||||| | | |||||| ||| | Sbjct 597542 CTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGACAACATGAAGAATCGTAT 597601 Query 76687 CA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGA 76745 || || ||| |||||||||||| || || || | | || || | || |||||| Sbjct 597602 CATTGCTGA----GGGTGGTTCCATCCAGAACATTCCCAACATTCCGGCGGAGATCAAGG 597657 Query 76746 ATCTCTACCGCACAGTGTGGGAAATC 76771 || ||| || |||||||| ||| Sbjct 597658 CCCTGTACAAGACCGTGTGGGAGATC 597683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569368829280