Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq4 187 3e-42 seq3 170 3e-37 seq8 154 2e-32 seq9 127 3e-24 seq5 111 2e-19 >seq2 Length=5746313 Score = 248 bits (274), Expect = 1e-60 Identities = 426/616 (69%), Gaps = 7/616 (1%) Strand=Plus/Plus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 |||||||| || ||||| || || || |||| ||||||||| || || | || ||||| Sbjct 1086664 AATGACCAGGGTAACCGAACCACACCCTCGTTCGTTGCCTTCACCGACACCGAGCGTCTG 1086723 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | || ||||| || || || ||| || ||||||||| ||| || ||||| || ||| Sbjct 1086724 ATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCTGCCAACACCGTCTTCGATGCG 1086783 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| | |||||||||||||| | || | || || | ||||| ||| ||| Sbjct 1086784 AAGCGATTGATTGGTCGCAAGTTCGCCGACCCCGAGGTTCAGGCTGATATGAAGCACTTC 1086843 Query 195554 TCTTATGAAGTT--GTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACG 195611 | | | ||| | | | | |||| |||||||| || | ||||| | | | Sbjct 1086844 CCCT-TCAAGATCATTGACAAGAATGGC----AAGCCTATTGTTGAGGTTGAGTACAAGG 1086898 Query 195612 GTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGG 195671 | |||| || || | ||||| || ||||| || ||||| |||| |||||| || Sbjct 1086899 GCGAGACCAAGACTTTCACACCCGAGGAGATTTCCTCCATGGTCTTGACCAAGATGCGGG 1086958 Query 195672 AGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTT 195731 ||||||| || | | | | ||| || || | | || || || || || ||||| | Sbjct 1086959 AGACTGCCGAGGCCTACCTTGGTGGTACCGTCACCAACGCTGTCGTTACAGTCCCTGCCT 1087018 Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791 |||||| || || || |||||||| || ||||| |||| | |||||| ||||| ||| Sbjct 1087019 ACTTCAACGACTCTCAGCGACAGGCCACCAAGGATGCTGGTCTTATTGCTGGTCTCAACG 1087078 Query 195792 GTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA 195851 || |||| ||||| || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 1087079 TCCTGCGAATCATCAACGAGCCCACAGCCGCTGCCATTGCCTACGGTCTTGATAAGAAGG 1087138 Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911 || | || ||||| | ||||| || || ||||| ||||| || |||||||| | Sbjct 1087139 TCGAGGGCGAGCGCAATGTCCTCATCTTCGACCTGGGTGGCGGTACTTTCGATGTCTCCC 1087198 Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971 | || | || || | ||||| ||||| || ||| | ||||| ||||| || || | | Sbjct 1087199 TGCTTACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACACCCACTTGG 1087258 Query 195972 GTGGTGAAGATTTCGA 195987 ||||||| || || || Sbjct 1087259 GTGGTGAGGACTTTGA 1087274 >seq4 Length=3212107 Score = 187 bits (206), Expect = 3e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| ||||| || || || ||||| ||||| |||||||| ||||| ||||| Sbjct 2383211 GTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCGAC 2383270 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || |||| | ||||||||||| ||||| ||||| || || || || || ||| | || Sbjct 2383271 AATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGATC 2383330 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || |||||||| ||||| || ||||||||||||||| | || |||||| |||||||||| Sbjct 2383331 TTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGGAA 2383390 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| |||||||| || | || || |||||| Sbjct 2383391 TCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGT 2383426 Score = 172 bits (190), Expect = 7e-38 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | || ||||| || ||||||||||||||||||| Sbjct 2383650 GTGGTATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGT 2383709 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || || || ||| |||| |||||| || || |||||||| ||||| || | Sbjct 2383710 CGTCGGATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGG 2383769 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||| || || ||||| |||||||| || ||| | || ||||| |||||| | || | Sbjct 2383770 ATCAACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACT 2383829 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| ||||| || || || ||||| ||||| | || || || ||| Sbjct 2383830 ACAACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGGT 2383882 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| || || | || ||||| || ||||| || |||||||||| Sbjct 2383422 GTGGTATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGT 2383481 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || || ||| |||| ||||||||| || ||||| || ||||| || | Sbjct 2383482 CATCGGATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTG 2383541 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || |||||| | || ||||| || || ||| | || ||||| || || || ||| | Sbjct 2383542 ACCAACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACT 2383601 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || || |||||||| | || || |||||| | || || |||||| Sbjct 2383602 ACAACATCCAGAAAGAGTCTACCTTGCATCTGGTTCTACGTCTGCGTGGTGGT 2383654 Score = 150 bits (166), Expect = 2e-31 Identities = 236/331 (71%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||||| ||| || | || || |||| || | || | | || || || || Sbjct 2200619 AAGATGAAGGAGGTTGCTGAGACCTATC-TGGGCAAGAAGGTTACCCACGCCGTCGTCAC 2200677 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 ||| ||||| ||||||| || || |||| || || |||||||| | | ||||| Sbjct 2200678 TGTGCCTGCCTACTTCAACGACAACCAGAGACAAGCCACTAAGGACGCAGGCACCATTGC 2200737 Query 195781 GGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 ||||| || ||| || | ||| |||| || || || || ||||| ||||| || |||| Sbjct 2200738 TGGTCTCAA-TGTGCTCCGTATTGTCAACGAGCCTACTGCCGCTGCTATTGCCTACGGTC 2200796 Query 195840 TGGACAAGAACAAGGACGAAGA---TAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 | ||||||| | |||| | || | | | ||| | || ||||| |||||||||| Sbjct 2200797 TAGACAAGACCGAGGATGGTGAGCGTCACATTGTCGT---CTACGATCTTGGTGGTGGTA 2200853 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | || |||||||| || || ||||| ||| | ||||| || |||||| |||| Sbjct 2200854 CTTTCGATGTCTCTCTCCTGTCCATTGACCAGGGTGTCTTCGAGGTTCTGGCTACCGCTG 2200913 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||||||||| |||||||| || ||||| Sbjct 2200914 GTGATACTCATCTCGGTGGTGAGGACTTCGA 2200944 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 195311 GATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATC 195370 ||| | ||||| || ||||| ||||| ||||| |||||| | | || |||| || Sbjct 2200148 GATCTGGGAACCACCTACTCCTGTGTCGGTGTGATGCAAAAAGGACAAGTCCAGATCCTC 2200207 Query 195371 CCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGT 195430 || |||||||||||||| | ||||| || ||||||||||| || || | || | Sbjct 2200208 GTCAACGACCAAGGAAACCGGATTACTCCCTCATACGTTGCCTTCACCGAGGACGAGAGA 2200267 Query 195431 CTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGA 195489 | || ||||| || || ||| | ||| | || | ||||| ||||||| ||||||| Sbjct 2200268 TTAGTCGGAGACGCTGCCAAACAACAGGCGGCGAGCAACCCACACAATACTATCTTTGA 2200326 >seq3 Length=5106013 Score = 170 bits (188), Expect = 3e-37 Identities = 151/189 (80%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| ||||| ||||| ||||| || || || || |||||||||||||| |||||||| | Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| ||||| || | || ||||||| || || ||||| |||||||| ||||| || | Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 |||| || || |||||||| || |||||||| ||||| |||||||| | || |||||| Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850 Query 172043 TTCAAAAGG 172051 | || |||| Sbjct 1582849 TCCAGAAGG 1582841 Score = 104 bits (114), Expect = 3e-17 Identities = 219/327 (67%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || || | |||| | || | || || | || || || ||| Sbjct 2483616 AAGATGAAGGAGACTGCTGAGTCGTACATGAGCAAGCCCGTCAAGAACGCTGTCGTCACT 2483557 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || || || || ||||| || | | || || Sbjct 2483556 GTGCCCGCCTACTTCAACGACTCGCAGCGTCAAGCTACCAAGGATGCCGGTCAAATCGCT 2483497 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| ||| | || | || || ||||| || || || | || || |||||| Sbjct 2483496 GGTCTTAACGTTCTCCGTGTTGTTAACGAGCCAACCGCTGCCGCTCTGGCCTACGGTCTG 2483437 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| | ||| || | ||| || ||| | ||||||||||| || Sbjct 2483436 GAGAAGGAGGCTGACCGAGTTGTTGCTGT------CTACGATTTGGGTGGTGGTACCTTC 2483383 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| |||| |||| | ||| | ||| | ||||| || ||| |||| ||||| Sbjct 2483382 GATATCTCGGTTCTTGAAATTCAGAACGGTGTTTTCGAGGTCAAGTCTACCAACGGTGAC 2483323 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || | |||||||| || |||||| Sbjct 2483322 ACCCACTTGGGTGGTGAGGACTTCGAT 2483296 >seq8 Length=2477967 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||| || Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||||||||| || ||||| || Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || || || || |||||| | || |||||| Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||| || || ||||| || || | || || || ||||| Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGTCTGCGTGGAGGTGC 2273377 >seq9 Length=2445292 Score = 127 bits (140), Expect = 3e-24 Identities = 176/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || || ||||| ||||| |||| ||| ||| | ||||| ||| || | || ||| Sbjct 565556 CAGCGTCAAGCGACCAAGGATGCTGGTGCCATTTCCGGTCTCAACGTCCTCCGTATCATC 565615 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGG---ACGAAGAT 195862 || || || || || || || || || ||||| |||| | |||||| || | || Sbjct 565616 AACGAGCCTACCGCCGCCGCCATCGCCTATGGCCTGGGCTCCAACAAGTCCAACAAGGAG 565675 Query 195863 AAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATT 195922 | ||||| |||||| ||| | ||||||||||| || |||||||| || ||||| ||| Sbjct 565676 AGGAATGTCATGATCTACGATTTGGGTGGTGGTACTTTCGATGTCTCCCTGCTCAACATT 565735 Query 195923 GAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982 | || ||| | ||| || || || || |||||||| || || | |||||| |||| Sbjct 565736 CAGGGCGGTGTCTTCACCGTCAAAGCCACCGCTGGTGACACCCACTTGGGTGGTCAAGAC 565795 Query 195983 TTCGAT 195988 |||||| Sbjct 565796 TTCGAT 565801 >seq5 Length=3093439 Score = 111 bits (122), Expect = 2e-19 Identities = 295/439 (67%), Gaps = 19/439 (4%) Strand=Plus/Minus Query 198516 AACCCCGAAAAGTACTATGGAAGT--GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCG 198573 || |||||||||| | | |||| |||||| ||||| || |||||| |||| |||| Sbjct 901412 AAGCCCGAAAAGTTCCA--GAAGCTAGGTGCCAAGATCCCGCGCGGTGCTATTCTTGCCG 901355 Query 198574 GTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCC 198633 | | || || || || |||||||| || || |||| || || || ||| | || | Sbjct 901354 GACCTCCAGGAACGGGCAAAACCCTGCTCGCCAAGGCTACGGCTGGGGAGTCGGGGGTGC 901295 Query 198634 CCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTA 198690 |||| |||||||| || |||| ||||| | ||||||||||||| ||||| || || Sbjct 901294 CCTT-CTTCAGTG-TCAGCGGTTCAGAGTT-CGTCGAGATGTTCGTCGGTGTGGGAGCGT 901238 Query 198691 AGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTG 198750 | || || || || || | ||| ||| | || ||| || ||| ||||||| | Sbjct 901237 CTAGAGTACGAGATCTGTTCGCTACAGCGCGTAAGAACGCACCTTGCATCGTCTTCATCG 901178 Query 198751 ATGAGATTGACGCTGTTGGTAAGAAGCGTG--GTGGAACTACTAC-ACCTGGTAATGATG 198807 | || || || ||| |||| | | |||| | || | || | ||||| || | Sbjct 901177 ACGAAATCGATGCTATTGGCAGGTCCCGTGCCGAGGGTCAACGGCTTGGAGGTAACGACG 901118 Query 198808 AGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGACA---ATGAGA 198864 |||| || ||| | ||||| | || || ||||||||||| || ||| |||| Sbjct 901117 AGCGAGAAGCGACTCTCAACCAAATCCTTACAGAGATGGATGGCTTCAACACGCGTGAG- 901059 Query 198865 CTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTC 198924 | | || || || |||| | ||| || ||| | ||| |||| || | || || | | Sbjct 901058 CAG--ATTGTTGTCCTTGCCGGTACCAACAGGGTAGATGTCCTGGACAAGGCCTTGATGC 901001 Query 198925 GTCCCGGTCGATTCGACCG 198943 | || || || |||||||| Sbjct 901000 GACCTGGACGTTTCGACCG 900982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862145078320