Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 248 1e-60
seq4 187 3e-42
seq3 170 3e-37
seq8 154 2e-32
seq9 127 3e-24
seq5 111 2e-19
>seq2
Length=5746313
Score = 248 bits (274), Expect = 1e-60
Identities = 426/616 (69%), Gaps = 7/616 (1%)
Strand=Plus/Plus
Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433
|||||||| || ||||| || || || |||| ||||||||| || || | || |||||
Sbjct 1086664 AATGACCAGGGTAACCGAACCACACCCTCGTTCGTTGCCTTCACCGACACCGAGCGTCTG 1086723
Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493
| || ||||| || || || ||| || ||||||||| ||| || ||||| || |||
Sbjct 1086724 ATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCTGCCAACACCGTCTTCGATGCG 1086783
Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553
||||| | |||||||||||||| | || | || || | ||||| ||| |||
Sbjct 1086784 AAGCGATTGATTGGTCGCAAGTTCGCCGACCCCGAGGTTCAGGCTGATATGAAGCACTTC 1086843
Query 195554 TCTTATGAAGTT--GTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACG 195611
| | | ||| | | | | |||| |||||||| || | ||||| | | |
Sbjct 1086844 CCCT-TCAAGATCATTGACAAGAATGGC----AAGCCTATTGTTGAGGTTGAGTACAAGG 1086898
Query 195612 GTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGG 195671
| |||| || || | ||||| || ||||| || ||||| |||| |||||| ||
Sbjct 1086899 GCGAGACCAAGACTTTCACACCCGAGGAGATTTCCTCCATGGTCTTGACCAAGATGCGGG 1086958
Query 195672 AGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTT 195731
||||||| || | | | | ||| || || | | || || || || || ||||| |
Sbjct 1086959 AGACTGCCGAGGCCTACCTTGGTGGTACCGTCACCAACGCTGTCGTTACAGTCCCTGCCT 1087018
Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791
|||||| || || || |||||||| || ||||| |||| | |||||| ||||| |||
Sbjct 1087019 ACTTCAACGACTCTCAGCGACAGGCCACCAAGGATGCTGGTCTTATTGCTGGTCTCAACG 1087078
Query 195792 GTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA 195851
|| |||| ||||| || || ||||| ||||| ||||| || ||||| || |||||
Sbjct 1087079 TCCTGCGAATCATCAACGAGCCCACAGCCGCTGCCATTGCCTACGGTCTTGATAAGAAGG 1087138
Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911
|| | || ||||| | ||||| || || ||||| ||||| || |||||||| |
Sbjct 1087139 TCGAGGGCGAGCGCAATGTCCTCATCTTCGACCTGGGTGGCGGTACTTTCGATGTCTCCC 1087198
Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971
| || | || || | ||||| ||||| || ||| | ||||| ||||| || || | |
Sbjct 1087199 TGCTTACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACACCCACTTGG 1087258
Query 195972 GTGGTGAAGATTTCGA 195987
||||||| || || ||
Sbjct 1087259 GTGGTGAGGACTTTGA 1087274
>seq4
Length=3212107
Score = 187 bits (206), Expect = 3e-42
Identities = 171/216 (79%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || ||||| ||||| || || || ||||| ||||| |||||||| ||||| |||||
Sbjct 2383211 GTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCGAC 2383270
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
|| |||| | ||||||||||| ||||| ||||| || || || || || ||| | ||
Sbjct 2383271 AATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGATC 2383330
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
|| |||||||| ||||| || ||||||||||||||| | || |||||| ||||||||||
Sbjct 2383331 TTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGGAA 2383390
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| ||||| |||||||| || | || || ||||||
Sbjct 2383391 TCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGT 2383426
Score = 172 bits (190), Expect = 7e-38
Identities = 178/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || | || ||||| || |||||||||||||||||||
Sbjct 2383650 GTGGTATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGT 2383709
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||| || || || || ||| |||| |||||| || || |||||||| ||||| || |
Sbjct 2383710 CGTCGGATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGG 2383769
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
|||| || || ||||| |||||||| || ||| | || ||||| |||||| | || |
Sbjct 2383770 ATCAACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACT 2383829
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| |||| ||||| || || || ||||| ||||| | || || || |||
Sbjct 2383830 ACAACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGGT 2383882
Score = 159 bits (176), Expect = 5e-34
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||||||||| || || | || ||||| || ||||| || ||||||||||
Sbjct 2383422 GTGGTATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGT 2383481
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || || || || || ||| |||| ||||||||| || ||||| || ||||| || |
Sbjct 2383482 CATCGGATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTG 2383541
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| || |||||| | || ||||| || || ||| | || ||||| || || || ||| |
Sbjct 2383542 ACCAACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACT 2383601
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | || || |||||||| | || || |||||| | || || ||||||
Sbjct 2383602 ACAACATCCAGAAAGAGTCTACCTTGCATCTGGTTCTACGTCTGCGTGGTGGT 2383654
Score = 150 bits (166), Expect = 2e-31
Identities = 236/331 (71%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720
|||||||||||| ||| || | || || |||| || | || | | || || || ||
Sbjct 2200619 AAGATGAAGGAGGTTGCTGAGACCTATC-TGGGCAAGAAGGTTACCCACGCCGTCGTCAC 2200677
Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780
||| ||||| ||||||| || || |||| || || |||||||| | | |||||
Sbjct 2200678 TGTGCCTGCCTACTTCAACGACAACCAGAGACAAGCCACTAAGGACGCAGGCACCATTGC 2200737
Query 195781 GGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839
||||| || ||| || | ||| |||| || || || || ||||| ||||| || ||||
Sbjct 2200738 TGGTCTCAA-TGTGCTCCGTATTGTCAACGAGCCTACTGCCGCTGCTATTGCCTACGGTC 2200796
Query 195840 TGGACAAGAACAAGGACGAAGA---TAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896
| ||||||| | |||| | || | | | ||| | || ||||| ||||||||||
Sbjct 2200797 TAGACAAGACCGAGGATGGTGAGCGTCACATTGTCGT---CTACGATCTTGGTGGTGGTA 2200853
Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956
| || |||||||| || || ||||| ||| | ||||| || |||||| ||||
Sbjct 2200854 CTTTCGATGTCTCTCTCCTGTCCATTGACCAGGGTGTCTTCGAGGTTCTGGCTACCGCTG 2200913
Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||||||||||||| |||||||| || |||||
Sbjct 2200914 GTGATACTCATCTCGGTGGTGAGGACTTCGA 2200944
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 195311 GATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATC 195370
||| | ||||| || ||||| ||||| ||||| |||||| | | || |||| ||
Sbjct 2200148 GATCTGGGAACCACCTACTCCTGTGTCGGTGTGATGCAAAAAGGACAAGTCCAGATCCTC 2200207
Query 195371 CCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGT 195430
|| |||||||||||||| | ||||| || ||||||||||| || || | || |
Sbjct 2200208 GTCAACGACCAAGGAAACCGGATTACTCCCTCATACGTTGCCTTCACCGAGGACGAGAGA 2200267
Query 195431 CTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGA 195489
| || ||||| || || ||| | ||| | || | ||||| ||||||| |||||||
Sbjct 2200268 TTAGTCGGAGACGCTGCCAAACAACAGGCGGCGAGCAACCCACACAATACTATCTTTGA 2200326
>seq3
Length=5106013
Score = 170 bits (188), Expect = 3e-37
Identities = 151/189 (80%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922
|||| ||||| ||||| ||||| || || || || |||||||||||||| |||||||| |
Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970
Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982
|||| ||||| || | || ||||||| || || ||||| |||||||| ||||| || |
Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910
Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042
|||| || || |||||||| || |||||||| ||||| |||||||| | || ||||||
Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850
Query 172043 TTCAAAAGG 172051
| || ||||
Sbjct 1582849 TCCAGAAGG 1582841
Score = 104 bits (114), Expect = 3e-17
Identities = 219/327 (67%), Gaps = 6/327 (2%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||||||||| || || | |||| | || | || || | || || || |||
Sbjct 2483616 AAGATGAAGGAGACTGCTGAGTCGTACATGAGCAAGCCCGTCAAGAACGCTGTCGTCACT 2483557
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| || || || || || || || ||||| || | | || ||
Sbjct 2483556 GTGCCCGCCTACTTCAACGACTCGCAGCGTCAAGCTACCAAGGATGCCGGTCAAATCGCT 2483497
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
||||| ||| ||| | || | || || ||||| || || || | || || ||||||
Sbjct 2483496 GGTCTTAACGTTCTCCGTGTTGTTAACGAGCCAACCGCTGCCGCTCTGGCCTACGGTCTG 2483437
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
|| ||| | ||| || | ||| || ||| | ||||||||||| ||
Sbjct 2483436 GAGAAGGAGGCTGACCGAGTTGTTGCTGT------CTACGATTTGGGTGGTGGTACCTTC 2483383
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
||| |||| |||| | ||| | ||| | ||||| || ||| |||| |||||
Sbjct 2483382 GATATCTCGGTTCTTGAAATTCAGAACGGTGTTTTCGAGGTCAAGTCTACCAACGGTGAC 2483323
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988
|| || | |||||||| || ||||||
Sbjct 2483322 ACCCACTTGGGTGGTGAGGACTTCGAT 2483296
>seq8
Length=2477967
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||| ||
Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||||||||| || ||||| ||
Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || | || || || || || ||||| || || || || |||||| | || ||||||
Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
| || |||||| || || ||||| || || | || || || |||||
Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGTCTGCGTGGAGGTGC 2273377
>seq9
Length=2445292
Score = 127 bits (140), Expect = 3e-24
Identities = 176/246 (72%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805
|| || || ||||| ||||| |||| ||| ||| | ||||| ||| || | || |||
Sbjct 565556 CAGCGTCAAGCGACCAAGGATGCTGGTGCCATTTCCGGTCTCAACGTCCTCCGTATCATC 565615
Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGG---ACGAAGAT 195862
|| || || || || || || || || ||||| |||| | |||||| || | ||
Sbjct 565616 AACGAGCCTACCGCCGCCGCCATCGCCTATGGCCTGGGCTCCAACAAGTCCAACAAGGAG 565675
Query 195863 AAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATT 195922
| ||||| |||||| ||| | ||||||||||| || |||||||| || ||||| |||
Sbjct 565676 AGGAATGTCATGATCTACGATTTGGGTGGTGGTACTTTCGATGTCTCCCTGCTCAACATT 565735
Query 195923 GAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982
| || ||| | ||| || || || || |||||||| || || | |||||| ||||
Sbjct 565736 CAGGGCGGTGTCTTCACCGTCAAAGCCACCGCTGGTGACACCCACTTGGGTGGTCAAGAC 565795
Query 195983 TTCGAT 195988
||||||
Sbjct 565796 TTCGAT 565801
>seq5
Length=3093439
Score = 111 bits (122), Expect = 2e-19
Identities = 295/439 (67%), Gaps = 19/439 (4%)
Strand=Plus/Minus
Query 198516 AACCCCGAAAAGTACTATGGAAGT--GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCG 198573
|| |||||||||| | | |||| |||||| ||||| || |||||| |||| ||||
Sbjct 901412 AAGCCCGAAAAGTTCCA--GAAGCTAGGTGCCAAGATCCCGCGCGGTGCTATTCTTGCCG 901355
Query 198574 GTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCC 198633
| | || || || || |||||||| || || |||| || || || ||| | || |
Sbjct 901354 GACCTCCAGGAACGGGCAAAACCCTGCTCGCCAAGGCTACGGCTGGGGAGTCGGGGGTGC 901295
Query 198634 CCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTA 198690
|||| |||||||| || |||| ||||| | ||||||||||||| ||||| || ||
Sbjct 901294 CCTT-CTTCAGTG-TCAGCGGTTCAGAGTT-CGTCGAGATGTTCGTCGGTGTGGGAGCGT 901238
Query 198691 AGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTG 198750
| || || || || || | ||| ||| | || ||| || ||| ||||||| |
Sbjct 901237 CTAGAGTACGAGATCTGTTCGCTACAGCGCGTAAGAACGCACCTTGCATCGTCTTCATCG 901178
Query 198751 ATGAGATTGACGCTGTTGGTAAGAAGCGTG--GTGGAACTACTAC-ACCTGGTAATGATG 198807
| || || || ||| |||| | | |||| | || | || | ||||| || |
Sbjct 901177 ACGAAATCGATGCTATTGGCAGGTCCCGTGCCGAGGGTCAACGGCTTGGAGGTAACGACG 901118
Query 198808 AGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGACA---ATGAGA 198864
|||| || ||| | ||||| | || || ||||||||||| || ||| ||||
Sbjct 901117 AGCGAGAAGCGACTCTCAACCAAATCCTTACAGAGATGGATGGCTTCAACACGCGTGAG- 901059
Query 198865 CTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTC 198924
| | || || || |||| | ||| || ||| | ||| |||| || | || || | |
Sbjct 901058 CAG--ATTGTTGTCCTTGCCGGTACCAACAGGGTAGATGTCCTGGACAAGGCCTTGATGC 901001
Query 198925 GTCCCGGTCGATTCGACCG 198943
| || || || ||||||||
Sbjct 901000 GACCTGGACGTTTCGACCG 900982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862145078320
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