Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 6e-30
seq9 127 6e-24
seq6 100 8e-16
>seq2
Length=5746313
Score = 147 bits (162), Expect = 6e-30
Identities = 567/880 (64%), Gaps = 17/880 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| | ||||| ||| || ||||| || ||||||||| | ||||| |||||
Sbjct 596927 GTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTT 596868
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || | ||| | |||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 596867 ACTCTTGCGGTTGGCATGGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGC 596808
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA-TCTGCCTTCCG 155808
|||||||| |||||| | |||| || || | |||| | || ||| || |
Sbjct 596807 CTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTT-TTGTCGACCTCGGCCCTCGG 596749
Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
||| || ||| || || | | | || || |||||| ||| ||| |||||||
Sbjct 596748 CCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGC 596689
Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATA 155925
||| || |||||| | |||| ||| | || || | | |||| | ||| || |
Sbjct 596688 ACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAA---CACGTTTCATGAAGA 596632
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985
||| ||| | ||| |||||| || | || ||| || | || || |
Sbjct 596631 GATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGT 596572
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
|||| || || || | ||| || | ||| | || ||||| ||||| |||||||
Sbjct 596571 TCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAA 596512
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
| |||| | |||| ||||| || || || || |||||||| || ||||| || |
Sbjct 596511 AGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGC 596452
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
||||| |||| |||||||||||| || || ||||| ||| |||| || || | |
Sbjct 596451 GAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCG 596392
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221
|||| | || || | || || |||||||| | |||| || || || |||||
Sbjct 596391 CACGAATACGGTGGATGTTGAGACCGATACCACC-GGCCATCTTGGAGATCATGGCGCAA 596333
Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281
||| | || | ||||||| ||||| ||||| | ||| | || ||||
Sbjct 596332 GTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAA 596273
Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341
|| | |||| | || || ||||||||||| || ||||| | || || | ||
Sbjct 596272 GATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAG 596213
Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGAC-CCGTGAA 156399
||||| | ||||| | ||| ||||| ||| | |||| ||| | | | || |
Sbjct 596212 TACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTC--GATGTCGTCTCCCCAGA 596155
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | || || | ||| ||||||||| || | ||| |||||| |||| ||
Sbjct 596154 TACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT 596095
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| || |||| || |||| ||| || || ||||| ||
Sbjct 596094 TCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTA 596055
>seq9
Length=2445292
Score = 127 bits (140), Expect = 6e-24
Identities = 203/286 (71%), Gaps = 8/286 (3%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||| ||||| || ||||| || | || || ||||| || || || ||
Sbjct 518490 CTTGACAAGACGTCGCTGGATGTAACCTGTCTCGGCCGTCTTCACAGCAGTGTCGATGAG 518431
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCT--TCCGGTCGTAGCCCCCCAATA 302700
||| |||||||| |||| || ||||| | | ||| | |||| |||| | |||
Sbjct 518430 ACCTTCACGACCAGCCATGGCGTGGAAATAAAACTCAGATGGGGTCA-AGCCTCTCAAGT 518372
Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760
| | | |||| ||||| ||||| || || || |||| |||| |||||| ||||| |||
Sbjct 518371 ACGAAT-TCTCGACGAATCCACGGGCTTCTGGTGAATAGTCGTCCTTGGTGAAGTGGGGC 518313
Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820
| || | || || |||| | || ||||||||||| ||||| |||||||||| | |
Sbjct 518312 AAAGTTCGGTACTTGAAGCCAAAGGGAATACGCTTTCCTTCAACAATCTGCTGTCCGACG 518253
Query 302821 CACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864
|| | |||||||||| ||||| || || || |||||||| ||
Sbjct 518252 AGCGCAGTCATCTGCGAGATATTGATAGATGAC--CCCTTGGACCC 518209
>seq6
Length=2893484
Score = 100 bits (110), Expect = 8e-16
Identities = 175/253 (69%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||| ||||| | | || | ||||| | | | || || || | ||| | |||||
Sbjct 2809269 ATAAGCCCACAGATCTCGCAGATGTGGACTCGGAAGGCGTCCGACACCTCAAAGAGCCGT 2809210
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | |||||||| | |||||| || || || |||||||| |||||
Sbjct 2809209 TCCTTCAAAAAGGCGGCAGCACCGTGAGCAATCATGCAGTCTCGTTCCATTTCTCCGAAC 2809150
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA--G 251584
|| ||||||||||||||||| | ||| ||| ||||||| || || || | | || |
Sbjct 2809149 CGGAGACCACCATCGCGAGCACGACCTTCGACAGGCTGGCGGGT--CATGATCTGTACTG 2809092
Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644
|||| || ||| || ||| |||| |||||||| ||||||||||||| | |
Sbjct 2809091 GACCACGGGCACGGGCGTGGATCTTGTCATCGACCATATGACGGAGACGCTGGTAGTAAG 2809032
Query 251645 CGGGACCGATGAA 251657
|| |||| |||
Sbjct 2809031 TCGGGCCGAAGAA 2809019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817015412447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |