Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 147 6e-30 seq9 127 6e-24 seq6 100 8e-16 >seq2 Length=5746313 Score = 147 bits (162), Expect = 6e-30 Identities = 567/880 (64%), Gaps = 17/880 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| | ||||| ||| || ||||| || ||||||||| | ||||| ||||| Sbjct 596927 GTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTT 596868 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || | ||| | |||||||| || ||| | ||| | || ||||| |||| || Sbjct 596867 ACTCTTGCGGTTGGCATGGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGC 596808 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA-TCTGCCTTCCG 155808 |||||||| |||||| | |||| || || | |||| | || ||| || | Sbjct 596807 CTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTT-TTGTCGACCTCGGCCCTCGG 596749 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||| || ||| || || | | | || || |||||| ||| ||| ||||||| Sbjct 596748 CCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGC 596689 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATA 155925 ||| || |||||| | |||| ||| | || || | | |||| | ||| || | Sbjct 596688 ACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAA---CACGTTTCATGAAGA 596632 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 ||| ||| | ||| |||||| || | || ||| || | || || | Sbjct 596631 GATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGT 596572 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||| | || ||||| ||||| ||||||| Sbjct 596571 TCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAA 596512 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | |||| | |||| ||||| || || || || |||||||| || ||||| || | Sbjct 596511 AGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGC 596452 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| |||| |||||||||||| || || ||||| ||| |||| || || | | Sbjct 596451 GAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCG 596392 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 |||| | || || | || || |||||||| | |||| || || || ||||| Sbjct 596391 CACGAATACGGTGGATGTTGAGACCGATACCACC-GGCCATCTTGGAGATCATGGCGCAA 596333 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 ||| | || | ||||||| ||||| ||||| | ||| | || |||| Sbjct 596332 GTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAA 596273 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || | |||| | || || ||||||||||| || ||||| | || || | || Sbjct 596272 GATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAG 596213 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGAC-CCGTGAA 156399 ||||| | ||||| | ||| ||||| ||| | |||| ||| | | | || | Sbjct 596212 TACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTC--GATGTCGTCTCCCCAGA 596155 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | || || | ||| ||||||||| || | ||| |||||| |||| || Sbjct 596154 TACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT 596095 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| || |||| || |||| ||| || || ||||| || Sbjct 596094 TCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTA 596055 >seq9 Length=2445292 Score = 127 bits (140), Expect = 6e-24 Identities = 203/286 (71%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| ||||| || ||||| || | || || ||||| || || || || Sbjct 518490 CTTGACAAGACGTCGCTGGATGTAACCTGTCTCGGCCGTCTTCACAGCAGTGTCGATGAG 518431 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCT--TCCGGTCGTAGCCCCCCAATA 302700 ||| |||||||| |||| || ||||| | | ||| | |||| |||| | ||| Sbjct 518430 ACCTTCACGACCAGCCATGGCGTGGAAATAAAACTCAGATGGGGTCA-AGCCTCTCAAGT 518372 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 | | | |||| ||||| ||||| || || || |||| |||| |||||| ||||| ||| Sbjct 518371 ACGAAT-TCTCGACGAATCCACGGGCTTCTGGTGAATAGTCGTCCTTGGTGAAGTGGGGC 518313 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 | || | || || |||| | || ||||||||||| ||||| |||||||||| | | Sbjct 518312 AAAGTTCGGTACTTGAAGCCAAAGGGAATACGCTTTCCTTCAACAATCTGCTGTCCGACG 518253 Query 302821 CACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 || | |||||||||| ||||| || || || |||||||| || Sbjct 518252 AGCGCAGTCATCTGCGAGATATTGATAGATGAC--CCCTTGGACCC 518209 >seq6 Length=2893484 Score = 100 bits (110), Expect = 8e-16 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||| ||||| | | || | ||||| | | | || || || | ||| | ||||| Sbjct 2809269 ATAAGCCCACAGATCTCGCAGATGTGGACTCGGAAGGCGTCCGACACCTCAAAGAGCCGT 2809210 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||||| | |||||| || || || |||||||| ||||| Sbjct 2809209 TCCTTCAAAAAGGCGGCAGCACCGTGAGCAATCATGCAGTCTCGTTCCATTTCTCCGAAC 2809150 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA--G 251584 || ||||||||||||||||| | ||| ||| ||||||| || || || | | || | Sbjct 2809149 CGGAGACCACCATCGCGAGCACGACCTTCGACAGGCTGGCGGGT--CATGATCTGTACTG 2809092 Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 |||| || ||| || ||| |||| |||||||| ||||||||||||| | | Sbjct 2809091 GACCACGGGCACGGGCGTGGATCTTGTCATCGACCATATGACGGAGACGCTGGTAGTAAG 2809032 Query 251645 CGGGACCGATGAA 251657 || |||| ||| Sbjct 2809031 TCGGGCCGAAGAA 2809019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817015412447