Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq12 149 8e-30
seq2 127 2e-23
seq1 87.8 2e-11
>seq12
Length=1385634
Score = 149 bits (164), Expect = 8e-30
Identities = 190/260 (73%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063
||| |||||||||| ||||| ||||||| | |||| |||| | || ||| ||
Sbjct 680079 GGCATCGACGTCGTCCGCAACCGCATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTCCCC 680138
Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123
|||| ||||||||| | | |||||||||||||||||| || | ||||||| || |||
Sbjct 680139 GCCGGCCGCCACAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGCGCAG 680198
Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183
||||| || || ||||||||| | || |||||||||||||||| ||| | ||||||
Sbjct 680199 CAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCGTGC 680258
Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTG 1574241
||| | | | |||||||| | || | |||||| |||||||| ||||| | |
Sbjct 680259 AACCAGAGCAACAAGATCATCGAGCCGCTGC--AGTCGCGGTGCGCCATCCTGCGGTACG 680316
Query 1574242 TGCGCCTGGGTGACGCCCAG 1574261
||| ||| ||||| |||
Sbjct 680317 GGCGGCTGACGGACGCGCAG 680336
>seq2
Length=5746313
Score = 127 bits (140), Expect = 2e-23
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| ||||| |||||||| || |||||| | || |||||| | || ||||||
Sbjct 5471315 GCCTCCAACTATCTCGATATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAC 5471374
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| ||||||||||| || ||||| || ||||||| | |||
Sbjct 5471375 ATGATCAAGGGCAAGTCCCCCGAGGAGATTCGGAAGACATTCAACATCACGAACG 5471429
Score = 116 bits (128), Expect = 5e-20
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|| || || |||||||| || || |||||| | ||||||||| |||||||| |||
Sbjct 552976 GATAGTATTGGCGGCACTGTCACTTGCGTGATCAGGAACGTGCCGAGTGGCCTCGGAGAG 552917
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| |||||||||||||| || |||| ||| || |||||||||||| || || || ||
Sbjct 552916 CCCTGCTTTGACAAGATGGAAGCCGAGCTGGCGCACGCCATGCTGAGCATACCTGCAACG 552857
Query 19167 AAGGGATTCGAGATTGG 19183
|||||||||||||| ||
Sbjct 552856 AAGGGATTCGAGATCGG 552840
Score = 107 bits (118), Expect = 2e-17
Identities = 240/358 (67%), Gaps = 8/358 (2%)
Strand=Plus/Minus
Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179
||| ||||| ||| |||| ||| ||||| | ||| || |||||||||| |||||
Sbjct 553580 CGTTGGCTGTATCGTCGATGGCTGCCCGCCAGGTATGGAGTTGACCGAGGCCGATATCCA 553521
Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239
|| ||| || || || |||| |||||| | || | | |||||||| || |||
Sbjct 553520 ACCCCAGATGACCCGTCGAAGACCTGGCCAGAGTGCCATCACAACGCCGCGAAATGAGAA 553461
Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299
|| | ||||| |||||||||||||| ||| ||| |||| || ||| | ||| ||||
Sbjct 553460 AGACAGAGTCATGATCCAGTCGGGCACCGAGTTCGGAGTCACACTGGGCACCCCCATCGG 553401
Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG---- 18355
|||| | ||| ||| |||||| |||| |||||| ||| | || ||
Sbjct 553400 CCTCATGGTGATGAACGAGGACCAGAGGCCTAAGGACTATGGAAACAAGACCATGGACCT 553341
Query 18356 --TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTC 18413
||||| || |||||||| | || ||| | | || ||||| ||||||||
Sbjct 553340 CTACCCGCGACCGAGCCACGCCGATTGGACGTACCTAGAGAAATACGGTGTCAAGGCG-A 553282
Query 18414 GTCG-GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470
|| | || |||||||| || || || ||||| | ||||| ||||| || ||
Sbjct 553281 GTAGTGGAGGAGGCCGAAGTTCGGCGCGAGAGACGATAGGTCGCGTAGCCGCTGGTGC 553224
Score = 104 bits (114), Expect = 3e-16
Identities = 177/257 (69%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||||||||| || || |||| ||| || ||||| |||||||| || | || |||||
Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGAT 596426
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||||| || || | || | ||||| || || | ||| | | |||
Sbjct 596425 GTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCG 596366
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || |||||| ||||||||| | ||||| ||||| ||||| || || || ||
Sbjct 596365 ATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCA 596306
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||| |||||||||| || || ||||| || || || | || | ||| ||
Sbjct 596305 ATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCA 596246
Query 1630306 GCGTTGAAGAGCGTGGG 1630322
|||||||| || || ||
Sbjct 596245 GCGTTGAACAGAGTAGG 596229
Score = 98.7 bits (108), Expect = 1e-14
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| |||||||||||| ||| || |||||||||||||| | || |||||
Sbjct 3731693 GCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATG 3731634
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||| ||| ||| ||||| | |
Sbjct 3731633 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGAGAGCAAGG 3731574
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || ||||| || |||||||| ||||| || ||||||| || |||||| || |
Sbjct 3731573 AGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGC 3731514
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| ||| ||||||| ||| || |||| || || ||||
Sbjct 3731513 AGGGCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGATG 3731454
Query 868931 ATCT 868934
||||
Sbjct 3731453 ATCT 3731450
Score = 87.8 bits (96), Expect = 2e-11
Identities = 135/191 (71%), Gaps = 9/191 (5%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||||| |||||| |||| ||||| ||||| || || ||||||
Sbjct 3731378 CCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTC 3731319
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| | ||| || ||| ||||| |||||||| || || |||
Sbjct 3731318 TTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCGAAG 3731259
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356
||| | || | |||||| || || |||||||| ||||||| | | |||
Sbjct 3731258 GCGACCAAGCGTTGAGCAAAG--GTTGA----CTCCTTGTCAGTGATCCAAGTAAGGGCC 3731205
Query 869357 CAGTCGGCCTT 869367
|| ||||||||
Sbjct 3731204 CACTCGGCCTT 3731194
>seq1
Length=5759619
Score = 87.8 bits (96), Expect = 2e-11
Identities = 144/205 (70%), Gaps = 12/205 (6%)
Strand=Plus/Plus
Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGG---CTC 1572444
||| ||||||||| |||||| || | |||||||| | | ||| ||| | |||
Sbjct 2736876 GCCGAAGCCGCCGGCGCCGCGGACGCTCGCGTCCAGCTCGGCTACC---TCGAGGACCTC 2736932
Query 1572445 GGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTG 1572504
||| | || ||||||| | |||||||||||| ||||||| | | | |
Sbjct 2736933 GGGCGTGTAGATGCGCTCGATGACGAGCTGGGCGATGCGG---TCGCCCTCGGCGATGCC 2736989
Query 1572505 G---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATC 1572561
| |||| ||||| |||||||||||| | ||| || | |||||| |||||||| ||
Sbjct 2736990 GAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTAACTTGGCCGCGGTAGTCGGCGTC 2737049
Query 1572562 GATGACGCCTGCGCCGACGTCGATG 1572586
||||||||| ||||| |||||||
Sbjct 2737050 GATGACGCCGGCGCCCGTGTCGATG 2737074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107136655994827
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |