Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 149 8e-30 seq2 127 2e-23 seq1 87.8 2e-11 >seq12 Length=1385634 Score = 149 bits (164), Expect = 8e-30 Identities = 190/260 (73%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063 ||| |||||||||| ||||| ||||||| | |||| |||| | || ||| || Sbjct 680079 GGCATCGACGTCGTCCGCAACCGCATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTCCCC 680138 Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123 |||| ||||||||| | | |||||||||||||||||| || | ||||||| || ||| Sbjct 680139 GCCGGCCGCCACAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGCGCAG 680198 Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183 ||||| || || ||||||||| | || |||||||||||||||| ||| | |||||| Sbjct 680199 CAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCGTGC 680258 Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTG 1574241 ||| | | | |||||||| | || | |||||| |||||||| ||||| | | Sbjct 680259 AACCAGAGCAACAAGATCATCGAGCCGCTGC--AGTCGCGGTGCGCCATCCTGCGGTACG 680316 Query 1574242 TGCGCCTGGGTGACGCCCAG 1574261 ||| ||| ||||| ||| Sbjct 680317 GGCGGCTGACGGACGCGCAG 680336 >seq2 Length=5746313 Score = 127 bits (140), Expect = 2e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| ||||| |||||||| || |||||| | || |||||| | || |||||| Sbjct 5471315 GCCTCCAACTATCTCGATATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAC 5471374 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||||||||| || ||||| || ||||||| | ||| Sbjct 5471375 ATGATCAAGGGCAAGTCCCCCGAGGAGATTCGGAAGACATTCAACATCACGAACG 5471429 Score = 116 bits (128), Expect = 5e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || || || |||||||| || || |||||| | ||||||||| |||||||| ||| Sbjct 552976 GATAGTATTGGCGGCACTGTCACTTGCGTGATCAGGAACGTGCCGAGTGGCCTCGGAGAG 552917 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || |||||||||||||| || |||| ||| || |||||||||||| || || || || Sbjct 552916 CCCTGCTTTGACAAGATGGAAGCCGAGCTGGCGCACGCCATGCTGAGCATACCTGCAACG 552857 Query 19167 AAGGGATTCGAGATTGG 19183 |||||||||||||| || Sbjct 552856 AAGGGATTCGAGATCGG 552840 Score = 107 bits (118), Expect = 2e-17 Identities = 240/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||| ||| |||| ||| ||||| | ||| || |||||||||| ||||| Sbjct 553580 CGTTGGCTGTATCGTCGATGGCTGCCCGCCAGGTATGGAGTTGACCGAGGCCGATATCCA 553521 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 || ||| || || || |||| |||||| | || | | |||||||| || ||| Sbjct 553520 ACCCCAGATGACCCGTCGAAGACCTGGCCAGAGTGCCATCACAACGCCGCGAAATGAGAA 553461 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || | ||||| |||||||||||||| ||| ||| |||| || ||| | ||| |||| Sbjct 553460 AGACAGAGTCATGATCCAGTCGGGCACCGAGTTCGGAGTCACACTGGGCACCCCCATCGG 553401 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG---- 18355 |||| | ||| ||| |||||| |||| |||||| ||| | || || Sbjct 553400 CCTCATGGTGATGAACGAGGACCAGAGGCCTAAGGACTATGGAAACAAGACCATGGACCT 553341 Query 18356 --TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTC 18413 ||||| || |||||||| | || ||| | | || ||||| |||||||| Sbjct 553340 CTACCCGCGACCGAGCCACGCCGATTGGACGTACCTAGAGAAATACGGTGTCAAGGCG-A 553282 Query 18414 GTCG-GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || | || |||||||| || || || ||||| | ||||| ||||| || || Sbjct 553281 GTAGTGGAGGAGGCCGAAGTTCGGCGCGAGAGACGATAGGTCGCGTAGCCGCTGGTGC 553224 Score = 104 bits (114), Expect = 3e-16 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| || || |||| ||| || ||||| |||||||| || | || ||||| Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGAT 596426 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||| || || | || | ||||| || || | ||| | | ||| Sbjct 596425 GTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCG 596366 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || |||||| ||||||||| | ||||| ||||| ||||| || || || || Sbjct 596365 ATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCA 596306 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| || || ||||| || || || | || | ||| || Sbjct 596305 ATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCA 596246 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 |||||||| || || || Sbjct 596245 GCGTTGAACAGAGTAGG 596229 Score = 98.7 bits (108), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| |||||||||||| ||| || |||||||||||||| | || ||||| Sbjct 3731693 GCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATG 3731634 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||| ||| ||| ||||| | | Sbjct 3731633 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGAGAGCAAGG 3731574 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||| || |||||||| ||||| || ||||||| || |||||| || | Sbjct 3731573 AGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGC 3731514 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||||| ||| || |||| || || |||| Sbjct 3731513 AGGGCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGATG 3731454 Query 868931 ATCT 868934 |||| Sbjct 3731453 ATCT 3731450 Score = 87.8 bits (96), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| |||||| |||| ||||| ||||| || || |||||| Sbjct 3731378 CCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTC 3731319 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | ||| || ||| ||||| |||||||| || || ||| Sbjct 3731318 TTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCGAAG 3731259 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 ||| | || | |||||| || || |||||||| ||||||| | | ||| Sbjct 3731258 GCGACCAAGCGTTGAGCAAAG--GTTGA----CTCCTTGTCAGTGATCCAAGTAAGGGCC 3731205 Query 869357 CAGTCGGCCTT 869367 || |||||||| Sbjct 3731204 CACTCGGCCTT 3731194 >seq1 Length=5759619 Score = 87.8 bits (96), Expect = 2e-11 Identities = 144/205 (70%), Gaps = 12/205 (6%) Strand=Plus/Plus Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGG---CTC 1572444 ||| ||||||||| |||||| || | |||||||| | | ||| ||| | ||| Sbjct 2736876 GCCGAAGCCGCCGGCGCCGCGGACGCTCGCGTCCAGCTCGGCTACC---TCGAGGACCTC 2736932 Query 1572445 GGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTG 1572504 ||| | || ||||||| | |||||||||||| ||||||| | | | | Sbjct 2736933 GGGCGTGTAGATGCGCTCGATGACGAGCTGGGCGATGCGG---TCGCCCTCGGCGATGCC 2736989 Query 1572505 G---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATC 1572561 | |||| ||||| |||||||||||| | ||| || | |||||| |||||||| || Sbjct 2736990 GAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTAACTTGGCCGCGGTAGTCGGCGTC 2737049 Query 1572562 GATGACGCCTGCGCCGACGTCGATG 1572586 ||||||||| ||||| ||||||| Sbjct 2737050 GATGACGCCGGCGCCCGTGTCGATG 2737074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136655994827