Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2 152 5e-32
seq8 104 2e-17
seq4 104 2e-17
>seq2
Length=5746313
Score = 152 bits (168), Expect = 5e-32
Identities = 1003/1588 (63%), Gaps = 52/1588 (3%)
Strand=Plus/Minus
Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTT-GCAATATTTTG 138416
|||||||||||||||||||| || | || | ||| | | |||| | ||| || ||
Sbjct 597682 ATCTCCCACACGGTCTTGTACAGGGCCTTGATCT-CCGCCGGAATGTTGGGAATGTTCTG 597624
Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476
||| || | |||||||| ||||| |||||| ||| ||||| || |
Sbjct 597623 GATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTC 597564
Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536
|| | ||| || | ||| | ||| | ||||| || || || || | || |||||
Sbjct 597563 GACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACG 597504
Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596
| ||| |||||| || | ||||| || | |||||||| ||||| ||||||| ||
Sbjct 597503 AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGT 597444
Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656
| || || ||||| |||| ||| ||| || || | ||| | ||||||| |
Sbjct 597443 ACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTG 597384
Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716
|| ||||| | ||||||||| | || || | ||||||||| ||||| ||
Sbjct 597383 CTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGTCGTATTG 597324
Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776
|| || ||| | || ||| ||||| | ||| || ||| | ||
Sbjct 597323 TAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGC 597264
Query 138777 CAACTCGTTGCTCGC-CTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835
| ||| || || || || ||||||| |||||| || ||| ||||||| ||||
Sbjct 597263 GATCTCCATGGAAGCTGTCAAG-GCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGA 597205
Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895
|| | ||||||| |||| | ||||||||||| || || || || || |
Sbjct 597204 GCTGCCTAGCCTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGAC 597145
Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG----GCTTCG 138951
|||| || || | |||| || || || |||| || ||| ||||| |||
Sbjct 597144 CTTGGACACCGAGGCCGATGGGACGGTGTCGCA----TGTTGCTGTTGCGCGCCTCTTGA 597089
Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CG 139009
| ||| || ||||| ||||| ||||| ||||| | || ||||| || || || ||
Sbjct 597088 ACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACG 597029
Query 139010 TATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACG-ACGTCGACAAA 139067
| | | | | | | ||| || || |||| ||||| ||||||| ||| | || |
Sbjct 597028 T---CGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGA 596972
Query 139068 TTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTC 139127
| || | ||||| | ||||| || || || || || || | ||||||
Sbjct 596971 ------GCCAGA----GAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTC 596922
Query 139128 GACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTT 139187
| || |||| || | |||| | ||| || || | || | ||| || || ||
Sbjct 596921 AATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTT 596862
Query 139188 TCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTAT 139247
||||| | || ||||| ||||| | || | ||||| || || | ||| |
Sbjct 596861 GCGGTTGGCATGGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAG 596802
Query 139248 AAT-GAATTTGAACA-AGTCCCTAG--CTTG--TATTTGACGCACGTAAAGTTCGTCGCG 139301
||| | || | || || || | |||| |||| || || | | | |||
Sbjct 596801 AATAGCAT---ACCAGAGCTTCTGGGCCTTGATCTTTTGTCG-ACCT--CGGCCCTCGGC 596748
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
||||||||| |||||||| | ||||| || ||||| | || | || | | ||
Sbjct 596747 CTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCA 596688
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
|| | || ||||| |||| ||| | |||||| || || || ||||||| |||||
Sbjct 596687 CTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATC 596628
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481
|||||||| | || | | | |||||| || ||||| | ||||| | |
Sbjct 596627 GGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTA-CCATGGTTC- 596570
Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539
|||| | | ||||| ||||| || || | |||||| || || |||||||| || |
Sbjct 596569 TTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAG 596510
Query 139540 GCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596
|| || | | ||||||||||| ||||||| ||| ||| || ||||| |||||
Sbjct 596509 GCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGA 596450
Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656
| ||| || | | ||| | | ||| |||||||| | ||| | | | ||
Sbjct 596449 AGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCA 596390
Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TC 139715
|| | || | |||| ||||| || ||| | | ||||| || | ||||| ||
Sbjct 596389 CGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTC 596330
Query 139716 GCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775
| | || || || ||||| |||||||| |||| ||| ||| || ||||| ||
Sbjct 596329 TTG-AGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGA 596271
Query 139776 CGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CA 139834
|| || || | | ||| || || |||||||||||| ||||| ||||| |
Sbjct 596270 TGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTA 596211
Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894
||| | ||||| | | ||| || || || | ||| | || || ||| |||||
Sbjct 596210 CTTG-CTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATAC 596152
Query 139895 CGACAGAGACTCGCATCAGCATATGTTG 139922
| |||| || ||||| | |||||| ||
Sbjct 596151 CAACAGCAACACGCATGATCATATGCTG 596124
>seq8
Length=2477967
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || || || || || | ||
Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| ||||| || || ||||| |||
Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| ||||| || ||||| ||||| | | | | || || || |||
Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || ||| | || |||| |||| |||||
Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGTCTGCGTGGAGG 2273374
>seq4
Length=3212107
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || ||||| || || || || | ||||||| | || |
Sbjct 2383214 AAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCGACAAT 2383273
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || ||||| |||||||| || || || || || || ||||| || ||||||||
Sbjct 2383274 GTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGATCTTC 2383333
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || || |||||||||||| | | | | || || || |||||||||||||||||
Sbjct 2383334 GCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGGAATCC 2383393
Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||| | || |||| |||| || ||
Sbjct 2383394 ACTCTCCACCTTGTCCTGCGTCTGCGTGGTGG 2383425
Score = 102 bits (112), Expect = 7e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || ||||| || || || || ||||| || || ||
Sbjct 2382903 ACCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCC 2382962
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||| ||||| || || || || || ||
Sbjct 2382963 TCCGACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGAC 2383022
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
||||| ||||||||||||||||| || || || ||||| | | | | || || ||
Sbjct 2383023 CAACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTAC 2383082
Query 24881 AACATTCAAAAGGA 24894
||||| || |||||
Sbjct 2383083 AACATCCAGAAGGA 2383096
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || || ||||| || || | |
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| ||||| || || || ||||||
Sbjct 2383715 GATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAA 2383774
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | |||||||| || || ||| |||||||| | | | || || || |||
Sbjct 2383775 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAAC 2383834
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| |||||||| ||||| ||| ||||
Sbjct 2383835 ATTCAGAAGGAATCAACACTTCACCTGGT 2383863
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | ||||| || || || ||||| || || || | |
Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || || || ||||| || |||
Sbjct 2383487 GATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAA 2383546
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
||||| |||||||||||||| || ||| ||||||||
Sbjct 2383547 CAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGAT 2383582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897425664680
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