Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 152 5e-32 seq8 104 2e-17 seq4 104 2e-17 >seq2 Length=5746313 Score = 152 bits (168), Expect = 5e-32 Identities = 1003/1588 (63%), Gaps = 52/1588 (3%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTT-GCAATATTTTG 138416 |||||||||||||||||||| || | || | ||| | | |||| | ||| || || Sbjct 597682 ATCTCCCACACGGTCTTGTACAGGGCCTTGATCT-CCGCCGGAATGTTGGGAATGTTCTG 597624 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 ||| || | |||||||| ||||| |||||| ||| ||||| || | Sbjct 597623 GATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTC 597564 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 || | ||| || | ||| | ||| | ||||| || || || || | || ||||| Sbjct 597563 GACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACG 597504 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 | ||| |||||| || | ||||| || | |||||||| ||||| ||||||| || Sbjct 597503 AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGT 597444 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | || || ||||| |||| ||| ||| || || | ||| | ||||||| | Sbjct 597443 ACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTG 597384 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 || ||||| | ||||||||| | || || | ||||||||| ||||| || Sbjct 597383 CTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGTCGTATTG 597324 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 || || ||| | || ||| ||||| | ||| || ||| | || Sbjct 597323 TAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGC 597264 Query 138777 CAACTCGTTGCTCGC-CTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 | ||| || || || || ||||||| |||||| || ||| ||||||| |||| Sbjct 597263 GATCTCCATGGAAGCTGTCAAG-GCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGA 597205 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 || | ||||||| |||| | ||||||||||| || || || || || | Sbjct 597204 GCTGCCTAGCCTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGAC 597145 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG----GCTTCG 138951 |||| || || | |||| || || || |||| || ||| ||||| ||| Sbjct 597144 CTTGGACACCGAGGCCGATGGGACGGTGTCGCA----TGTTGCTGTTGCGCGCCTCTTGA 597089 Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CG 139009 | ||| || ||||| ||||| ||||| ||||| | || ||||| || || || || Sbjct 597088 ACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACG 597029 Query 139010 TATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACG-ACGTCGACAAA 139067 | | | | | | | ||| || || |||| ||||| ||||||| ||| | || | Sbjct 597028 T---CGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGA 596972 Query 139068 TTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTC 139127 | || | ||||| | ||||| || || || || || || | |||||| Sbjct 596971 ------GCCAGA----GAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTC 596922 Query 139128 GACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTT 139187 | || |||| || | |||| | ||| || || | || | ||| || || || Sbjct 596921 AATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTT 596862 Query 139188 TCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTAT 139247 ||||| | || ||||| ||||| | || | ||||| || || | ||| | Sbjct 596861 GCGGTTGGCATGGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAG 596802 Query 139248 AAT-GAATTTGAACA-AGTCCCTAG--CTTG--TATTTGACGCACGTAAAGTTCGTCGCG 139301 ||| | || | || || || | |||| |||| || || | | | ||| Sbjct 596801 AATAGCAT---ACCAGAGCTTCTGGGCCTTGATCTTTTGTCG-ACCT--CGGCCCTCGGC 596748 Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||| |||||||| | ||||| || ||||| | || | || | | || Sbjct 596747 CTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCA 596688 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || | || ||||| |||| ||| | |||||| || || || ||||||| ||||| Sbjct 596687 CTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATC 596628 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 |||||||| | || | | | |||||| || ||||| | ||||| | | Sbjct 596627 GGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTA-CCATGGTTC- 596570 Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 |||| | | ||||| ||||| || || | |||||| || || |||||||| || | Sbjct 596569 TTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAG 596510 Query 139540 GCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || | | ||||||||||| ||||||| ||| ||| || ||||| ||||| Sbjct 596509 GCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGA 596450 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656 | ||| || | | ||| | | ||| |||||||| | ||| | | | || Sbjct 596449 AGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCA 596390 Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TC 139715 || | || | |||| ||||| || ||| | | ||||| || | ||||| || Sbjct 596389 CGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTC 596330 Query 139716 GCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 | | || || || ||||| |||||||| |||| ||| ||| || ||||| || Sbjct 596329 TTG-AGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGA 596271 Query 139776 CGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CA 139834 || || || | | ||| || || |||||||||||| ||||| ||||| | Sbjct 596270 TGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTA 596211 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 ||| | ||||| | | ||| || || || | ||| | || || ||| ||||| Sbjct 596210 CTTG-CTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATAC 596152 Query 139895 CGACAGAGACTCGCATCAGCATATGTTG 139922 | |||| || ||||| | |||||| || Sbjct 596151 CAACAGCAACACGCATGATCATATGCTG 596124 >seq8 Length=2477967 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || ||||| ||| Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| | || |||| |||| ||||| Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGTCTGCGTGGAGG 2273374 >seq4 Length=3212107 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || ||||| || || || || | ||||||| | || | Sbjct 2383214 AAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCGACAAT 2383273 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||| |||||||| || || || || || || ||||| || |||||||| Sbjct 2383274 GTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGATCTTC 2383333 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || |||||||||||| | | | | || || || ||||||||||||||||| Sbjct 2383334 GCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGGAATCC 2383393 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || |||| |||| || || Sbjct 2383394 ACTCTCCACCTTGTCCTGCGTCTGCGTGGTGG 2383425 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 2382903 ACCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCC 2382962 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||| ||||| || || || || || || Sbjct 2382963 TCCGACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGAC 2383022 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||||||||||||||||| || || || ||||| | | | | || || || Sbjct 2383023 CAACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTAC 2383082 Query 24881 AACATTCAAAAGGA 24894 ||||| || ||||| Sbjct 2383083 AACATCCAGAAGGA 2383096 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || ||||| || || | | Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| ||||| || || || |||||| Sbjct 2383715 GATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAA 2383774 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||||||| | | | || || || ||| Sbjct 2383775 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAAC 2383834 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| ||||| ||| |||| Sbjct 2383835 ATTCAGAAGGAATCAACACTTCACCTGGT 2383863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||| || || || ||||| || || || | | Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || ||||| || ||| Sbjct 2383487 GATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAA 2383546 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||| |||||||||||||| || ||| |||||||| Sbjct 2383547 CAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGAT 2383582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897425664680