Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-23 seq12 120 5e-21 seq1 98.7 2e-14 seq15 89.7 8e-12 >seq2 Length=5746313 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||| ||||||||||| |||||| | || ||||||||||| |||||| Sbjct 5471315 GCCTCCAACTATCTCGATATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAC 5471374 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| |||||||| || || ||||| || ||||||| | ||| Sbjct 5471375 ATGATCAAGGGCAAGTCCCCCGAGGAGATTCGGAAGACATTCAACATCACGAACG 5471429 Score = 104 bits (114), Expect = 4e-16 Identities = 179/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || |||||||||||| ||| || |||||||||||||| | | Sbjct 3731701 TGACACCAGCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCA 3731642 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | |||| ||||||| |||| Sbjct 3731641 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGA 3731582 Query 794011 GCGACGCAAGCAGG---CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 | ||||| ||| ||||| || || || |||||||| || ||||||| || || Sbjct 3731581 G---AGCAAGGAGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGT 3731525 Query 794068 TCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 |||| || | || || || ||| || | ||| | | ||||||| ||| || |||| Sbjct 3731524 TCATTCCCAGCAGGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACA 3731466 Query 794127 GCCTCGATGATGATCT 794142 || || ||||||||| Sbjct 3731465 GCATCAGTGATGATCT 3731450 >seq12 Length=1385634 Score = 120 bits (132), Expect = 5e-21 Identities = 195/279 (70%), Gaps = 10/279 (4%) Strand=Plus/Plus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCG---AAAAGAA--TCGACC 2019195 ||| | |||||||| || | ||||||| |||||| | ||||| || || Sbjct 680079 GGCATCGACGTCGTCCGCAACCGCATCAAGG-----GCTTCGCCCAGAAGAAGGTCACCC 680133 Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255 | || |||||||||||||| | | |||||||| ||||||||| || | ||||||| | Sbjct 680134 TCCCCGCCGGCCGCCACAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCG 680193 Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 | |||||||| ||||| |||||||| | ||| ||||||||||||| || || | | Sbjct 680194 CGCAGCAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCG 680253 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | |||||| | | | ||||||| | || ||| || ||||||||| |||| | Sbjct 680254 CGTGCAACCAGAGCAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCCATCCTGCGGT 680313 Query 2019376 TTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGC 2019414 | ||| || || ||||| ||| | | | ||| |||| Sbjct 680314 ACGGGCGGCTGACGGACGCGCAGGTGGTCAAGCGGCTGC 680352 >seq1 Length=5759619 Score = 98.7 bits (108), Expect = 2e-14 Identities = 150/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGAC--CCAC 2017520 |||||| ||| ||||||||||| ||||| || || |||||| | ||| | || | Sbjct 2736867 GCCCGTACTGCCGAAGCCGCCGGCGCCGCGGACGCTCGCGTCCAGC---TCGGCTACCTC 2736923 Query 2017521 GCGGGC-TCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCC 2017579 | || | ||||| | || ||||||| | ||||||||| || |||| || | Sbjct 2736924 GAGGACCTCGGGCGTGTAGATGCGCTCGATGACGAGCTGGGCGATGCGGTCGCCCTCGGC 2736983 Query 2017580 CACGACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTC 2017639 | | || ||||| ||||| ||||| ||||| | ||| ||| | ||| || ||||| Sbjct 2736984 GATGCCGAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTAACTTGGCCGCGGTAGTC 2737043 Query 2017640 GGCATCGATGACGCCGGCGCCGACGTCGATG 2017670 ||| ||||||||||||||||| ||||||| Sbjct 2737044 GGCGTCGATGACGCCGGCGCCCGTGTCGATG 2737074 >seq15 Length=542567 Score = 89.7 bits (98), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||| ||||| ||||| || ||||||||| ||||||| || || ||| Sbjct 505220 GTACTTGGTGACGGCTTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCCGGCAG 505279 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | ||| |||||||| |||| Sbjct 505280 GATGAGACGGACTGAGGTTTGGATCTCTCGGG 505311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243102388609