Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 3e-23
seq12 120 5e-21
seq1 98.7 2e-14
seq15 89.7 8e-12
>seq2
Length=5746313
Score = 127 bits (140), Expect = 3e-23
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||| ||||| ||||||||||| |||||| | || ||||||||||| ||||||
Sbjct 5471315 GCCTCCAACTATCTCGATATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAC 5471374
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| |||||||||||||| |||||||| || || ||||| || ||||||| | |||
Sbjct 5471375 ATGATCAAGGGCAAGTCCCCCGAGGAGATTCGGAAGACATTCAACATCACGAACG 5471429
Score = 104 bits (114), Expect = 4e-16
Identities = 179/256 (70%), Gaps = 8/256 (3%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || |||||||||||| ||| || |||||||||||||| | |
Sbjct 3731701 TGACACCAGCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCA 3731642
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | |||| ||||||| ||||
Sbjct 3731641 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCCGA 3731582
Query 794011 GCGACGCAAGCAGG---CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067
| ||||| ||| ||||| || || || |||||||| || ||||||| || ||
Sbjct 3731581 G---AGCAAGGAGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGT 3731525
Query 794068 TCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126
|||| || | || || || ||| || | ||| | | ||||||| ||| || ||||
Sbjct 3731524 TCATTCCCAGCAGGGCGCAAGGG-AGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACA 3731466
Query 794127 GCCTCGATGATGATCT 794142
|| || |||||||||
Sbjct 3731465 GCATCAGTGATGATCT 3731450
>seq12
Length=1385634
Score = 120 bits (132), Expect = 5e-21
Identities = 195/279 (70%), Gaps = 10/279 (4%)
Strand=Plus/Plus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCG---AAAAGAA--TCGACC 2019195
||| | |||||||| || | ||||||| |||||| | ||||| || ||
Sbjct 680079 GGCATCGACGTCGTCCGCAACCGCATCAAGG-----GCTTCGCCCAGAAGAAGGTCACCC 680133
Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255
| || |||||||||||||| | | |||||||| ||||||||| || | ||||||| |
Sbjct 680134 TCCCCGCCGGCCGCCACAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCG 680193
Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315
| |||||||| ||||| |||||||| | ||| ||||||||||||| || || | |
Sbjct 680194 CGCAGCAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCG 680253
Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375
| |||||| | | | ||||||| | || ||| || ||||||||| |||| |
Sbjct 680254 CGTGCAACCAGAGCAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCCATCCTGCGGT 680313
Query 2019376 TTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGC 2019414
| ||| || || ||||| ||| | | | ||| ||||
Sbjct 680314 ACGGGCGGCTGACGGACGCGCAGGTGGTCAAGCGGCTGC 680352
>seq1
Length=5759619
Score = 98.7 bits (108), Expect = 2e-14
Identities = 150/211 (71%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGAC--CCAC 2017520
|||||| ||| ||||||||||| ||||| || || |||||| | ||| | || |
Sbjct 2736867 GCCCGTACTGCCGAAGCCGCCGGCGCCGCGGACGCTCGCGTCCAGC---TCGGCTACCTC 2736923
Query 2017521 GCGGGC-TCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCC 2017579
| || | ||||| | || ||||||| | ||||||||| || |||| || |
Sbjct 2736924 GAGGACCTCGGGCGTGTAGATGCGCTCGATGACGAGCTGGGCGATGCGGTCGCCCTCGGC 2736983
Query 2017580 CACGACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTC 2017639
| | || ||||| ||||| ||||| ||||| | ||| ||| | ||| || |||||
Sbjct 2736984 GATGCCGAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTAACTTGGCCGCGGTAGTC 2737043
Query 2017640 GGCATCGATGACGCCGGCGCCGACGTCGATG 2017670
||| ||||||||||||||||| |||||||
Sbjct 2737044 GGCGTCGATGACGCCGGCGCCCGTGTCGATG 2737074
>seq15
Length=542567
Score = 89.7 bits (98), Expect = 8e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||| ||||| ||||| || ||||||||| ||||||| || || |||
Sbjct 505220 GTACTTGGTGACGGCTTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCCGGCAG 505279
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| || || || | ||| |||||||| ||||
Sbjct 505280 GATGAGACGGACTGAGGTTTGGATCTCTCGGG 505311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243102388609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |