Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq8 145 5e-30
seq4 145 5e-30
>seq8
Length=2477967
Score = 145 bits (160), Expect = 5e-30
Identities = 174/234 (74%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | |||||| ||||| | ||||||||||||||| ||||| ||||| ||
Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| | || || || ||||| ||||||||||||| || || ||||| ||||
Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || |||||||| | || || ||||| || | ||||| || | |||
Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTC 2273199
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
|| |||| ||| || ||||| |||||||||||||| || ||||||||||||||
Sbjct 2273198 CACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 2273145
>seq4
Length=3212107
Score = 145 bits (160), Expect = 5e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||||||||||||||| ||||| |||||||| ||| |||| | ||
Sbjct 2383117 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2383058
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||| ||||||| || || ||||| |||| | |||||||||||
Sbjct 2383057 TCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCC 2382998
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | || || |||||| || | || ||||||
Sbjct 2382997 TGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTC 2382938
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || ||||||||||| || ||||||||||||
Sbjct 2382937 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 2382905
Score = 116 bits (128), Expect = 2e-21
Identities = 150/205 (73%), Gaps = 8/205 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | ||| ||||| |||||||| ||||| || ||| | || ||||
Sbjct 2383411 CAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATC 2383352
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || |||||||||| ||| || ||||| |||| | |||||||||||
Sbjct 2383351 CTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTC 2383292
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | |||||| |||| ||| |
Sbjct 2383291 TTGAATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAA 2383236
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| || ||||||||||| ||
Sbjct 2383235 TGGTCTTGCCAGTGAGGGTCTTGAC 2383211
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| || | ||| ||| ||||| ||||| ||||| || | || ||||
Sbjct 2383638 AGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCC 2383579
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| ||||| ||||||| |||||| ||||| | || | |||||||||||
Sbjct 2383578 TCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCC 2383519
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || |||| || ||||||
Sbjct 2383518 TGAATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTC 2383459
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| |||||||| |||||
Sbjct 2383458 TTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| |||||||||| || || | |||||||||||||| ||||| | | | || ||||
Sbjct 2383866 AGAACCAGGTGAAGTGTTGAT-TCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 2383808
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || || ||||| || || || || || | || | || ||||||||
Sbjct 2383807 CTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTC 2383748
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || | ||| || || | ||| || ||
Sbjct 2383747 CTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGT 2383688
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| | ||||| || |||||||||||
Sbjct 2383687 CTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692676949189
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