Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4 104 2e-17
>seq4
Length=3212107
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || |||||| || | || || |||||||| ||||||||||| || || |
Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || || || ||||| | ||||||| || || || |||||
Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| |||||||| ||| || | |||||| | || | ||||| || || ||
Sbjct 2383305 ATGCCCTCCTTGTCTTG-AATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGAC 2383247
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774
||||| || || || |||||||| | ||| || ||
Sbjct 2383246 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || ||| || |||| ||| | || || ||||| || ||||| || ||
Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| || | || ||||| ||| | ||||||| ||| || || || |||
Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||||| ||||| || ||| || | ||||| | || | ||| || || || ||
Sbjct 2383533 ATACCCTCCTTGTCCTG-AATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAAC 2383475
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || || || || || || || ||||| || |||||
Sbjct 2383474 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219054459371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |