Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 9e-14 seq2 87.8 1e-11 >seq4 Length=3212107 Score = 95.1 bits (104), Expect = 9e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || ||||| || |||| |||||| ||||| || || || | ||| | | ||||| Sbjct 2200803 TTGTCTAGACCGTAGGCAATAGCAGCGGCAGTAGGCTCGTTGACAATACGGAGCACATTG 2200744 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||||||| | ||||| || |||||||||||||| || ||||| || || ||| Sbjct 2200743 AGACCAGCAATGGTGCCTGCGTCCTTAGTGGCTTGTCTCTGGTTGTCGTTGAAGTAGGCA 2200684 Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 || ||||| | ||||| | || | |||||| Sbjct 2200683 GGCACAGTGACGACGGCGTGGGTAACCTTCTT 2200652 >seq2 Length=5746313 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||||||||| || |||| ||||| || || || || || || |||| || || Sbjct 1087136 TTCTTATCAAGACCGTAGGCAATGGCAGCGGCTGTGGGCTCGTTGATGATTCGCAGGACG 1087077 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| || ||||| || ||||| |||| || || ||||| || || Sbjct 1087076 TTGAGACCAGCAATAAGACCAGCATCCTTGGTGGCCTGTCGCTGAGAGTCGTTGAAGTAG 1087017 Query 282452 GCAGGAACAGTAA 282464 ||||| || |||| Sbjct 1087016 GCAGGGACTGTAA 1087004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740628878031006