Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 9e-14
seq2 87.8 1e-11
>seq4
Length=3212107
Score = 95.1 bits (104), Expect = 9e-14
Identities = 113/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| || ||||| || |||| |||||| ||||| || || || | ||| | | |||||
Sbjct 2200803 TTGTCTAGACCGTAGGCAATAGCAGCGGCAGTAGGCTCGTTGACAATACGGAGCACATTG 2200744
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||||||||| | ||||| || |||||||||||||| || ||||| || || |||
Sbjct 2200743 AGACCAGCAATGGTGCCTGCGTCCTTAGTGGCTTGTCTCTGGTTGTCGTTGAAGTAGGCA 2200684
Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485
|| ||||| | ||||| | || | ||||||
Sbjct 2200683 GGCACAGTGACGACGGCGTGGGTAACCTTCTT 2200652
>seq2
Length=5746313
Score = 87.8 bits (96), Expect = 1e-11
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| ||||||||||| || |||| ||||| || || || || || || |||| || ||
Sbjct 1087136 TTCTTATCAAGACCGTAGGCAATGGCAGCGGCTGTGGGCTCGTTGATGATTCGCAGGACG 1087077
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| || ||||| || ||||| |||| || || ||||| || ||
Sbjct 1087076 TTGAGACCAGCAATAAGACCAGCATCCTTGGTGGCCTGTCGCTGAGAGTCGTTGAAGTAG 1087017
Query 282452 GCAGGAACAGTAA 282464
||||| || ||||
Sbjct 1087016 GCAGGGACTGTAA 1087004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740628878031006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |