Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 257 2e-63
seq8 125 7e-24
seq3 107 2e-18
seq4 89.7 5e-13
>seq2
Length=5746313
Score = 257 bits (284), Expect = 2e-63
Identities = 1204/1881 (64%), Gaps = 77/1881 (4%)
Strand=Plus/Minus
Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997
||| |||| || ||||| || ||||||||||||||||| ||||| | ||| |
Sbjct 597860 GGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGT 597801
Query 147998 GTCGTGCACCGACGACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGA 148054
| ||||| || ||| | || | || |||| | ||| | || || ||
Sbjct 597800 GAAGTGCATGCTCG---TGATCTTGCCCATGGTGGGGTCCCGCATGTGGATGTTCAAAGA 597744
Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTTAT 148111
|||| ||||| ||||| || |||||||| || ||||| | ||| | |||||
Sbjct 597743 CTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGA 597684
Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171
|||||||| | ||||||||||| |||||| | | |||||| | |||
Sbjct 597683 G---ATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTT 597627
Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231
||| | || || | | |||| || |||| ||| | ||| | | || |
Sbjct 597626 CTGGATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCAT 597567
Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291
|||| ||||| | | ||| | | || |||||||| |||||||| || || || ||
Sbjct 597566 GTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACG 597507
Query 148292 CCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350
|| ||| || | |||| ||| | || || || ||||||||||||||| ||||| |
Sbjct 597506 ACG-AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAG 597448
Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTT--T 148408
|| | || |||||||| || | || ||| |||||| | ||| ||| | |
Sbjct 597447 ATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACC---ATTCTGCT 597391
Query 148409 TATTTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467
| | ||| | || || | |||||||||| || || || || |||||||||||||
Sbjct 597390 TGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGT 597331
Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527
|||| || || || || || | || ||||||||| | | ||| ||||| |||
Sbjct 597330 CGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCT 597271
Query 148528 CCGCCGCCAGTTC----GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583
|| || | || | |||| || || || || | |||||| |||||| ||
Sbjct 597270 CCTTGGCGATCTCCATGGAAGCT---GTCAAG-GCACCATGGTAAATGGTCTCGAAGATC 597215
Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAAC 148640
||| |||||||| || || |||| ||| | ||||| || || | |||
Sbjct 597214 TGCTTGTTGAGCTGCCTAGC---CTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAA 597158
Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700
|| || ||||| || || || || | ||| ||||| |||||| |||||| | ||||
Sbjct 597157 GCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGC 597098
Query 148701 GCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCAC 148759
|| |||| || | || |||| |||| || |||||||||| || |||||||| ||
Sbjct 597097 GC-CTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGT 597039
Query 148760 CTTTGTAATTCTGCGCAGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCG 148813
|| || | | ||||| || ||| | || || || | ||| | |
Sbjct 597038 CTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGA 596979
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
| || || | |||||| | |||||| ||||| |||||| || || ||| || |
Sbjct 596978 GGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAAT 596919
Query 148874 GATCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930
|||||||| ||| ||||| ||||| ||| ||||| ||||||||| || |||||
Sbjct 596918 GATCTCGGTGCAGAGATTAGAGCTGC---GGATGGTGCCCAGGTTCTTTTGGTTACTCTT 596862
Query 148931 GCTGTT-GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989
|| ||| ||| | ||||||||| |||||| | || ||||| || ||| | ||||
Sbjct 596861 GCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCA 596803
Query 148990 CTATGAACCGATGC---AGGTCCTGCGCGCGCACTTGCT-GCTCGTAG----CGACCCTC 149041
|| | | || | || | ||| || |||| | | || | || |||||
Sbjct 596802 GAAT-AGC--ATACCAGAGCTTCTGGGC-----CTTGATCTTTTGTCGACCTCGGCCCTC 596751
Query 149042 CTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099
|||||| | ||| | || ||||||| | |||||||| |||| | || ||
Sbjct 596750 GGCCTCGTACTTCTCGTAGAGGGC--CTCGAACTCATCGCCGTAAACATCGGCCAGGCCA 596693
Query 149100 GGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAAC 149159
||||||| | |||||||| |||| |||| | |||| | | || || ||||| ||
Sbjct 596692 GGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAG 596633
Query 149160 AGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATG 149219
|||||||| | |||||| || | || ||||| || | ||||| || |
Sbjct 596632 AGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGG 596573
Query 149220 TTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279
|| || || | || | || | || | |||||| ||||| | || | ||
Sbjct 596572 TTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCA 596513
Query 149280 AGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336
| || || ||| ||||| || |||||||||| || | ||||||| |||||
Sbjct 596512 AAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACG 596453
Query 149337 CGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGC 149396
|||| ||| || |||| ||| ||| || ||||| ||| | || | |||| |
Sbjct 596452 CGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTC 596393
Query 149397 GCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-A 149455
|| || | ||| | ||||| ||||| || ||| | ||| ||||| |||| |
Sbjct 596392 GCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAA 596333
Query 149456 GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515
||| ||| || || || || || |||||||| ||||||| | || |||||
Sbjct 596332 GTC-TTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCA 596274
Query 149516 CGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575
|| ||| || | |||| || || ||||| || || ||||||||| ||
Sbjct 596273 AGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA 596214
Query 149576 ATA-TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634
|| || |||| ||| | | ||| | ||| | || | || ||||| || || ||
Sbjct 596213 GTACTTGCTGG-ACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGA 596155
Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694
| || | || || ||||| | ||||||||| |||| |||| | | ||| || |
Sbjct 596154 TACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT 596095
Query 149695 TGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGC 149754
| || | || || | |||||| |||| ||||| | ||||| ||||| |||
Sbjct 596094 TCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGT 596035
Query 149755 CGTGGTCAATGGCGGCGTCGa 149775
||| | ||||||||| |||||
Sbjct 596034 CGTAGACAATGGCGGAGTCGA 596014
Score = 147 bits (162), Expect = 2e-30
Identities = 343/510 (67%), Gaps = 27/510 (5%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| ||||| ||||| |||||||| ||||| || ||||| ||| || ||||| |
Sbjct 3731688 CTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTC 3731629
Query 120411 CATAAACTCGAACGGGTTGCT--CGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468
||| || ||||| |||||| | |||| || | | ||| | ||| | | |||
Sbjct 3731628 CATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCG--TTGCCGAGAGCAAGGAGG 3731571
Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528
|| |||||||| |||||||||||||| | |||| | | |||||| |||||||
Sbjct 3731570 AGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGG 3731511
Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
|| || | ||| || || ||||| | |||||| | || || || ||| ||
Sbjct 3731510 GCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGA---TG 3731454
Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGT--GTTCGATGCGCGTTC----GGTAGTACAG- 120641
|| | ||| | | |||| | |||| | ||| || || ||||
Sbjct 3731453 ------ATCTTCTGGACCTTCTCCTTGCTGGGGCGATTC---TTCAGGTGGGAGAACAGC 3731403
Query 120642 --GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||| |||||||| ||||| ||||||||||| ||||| |||| ||||||| || |||
Sbjct 3731402 AGGCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTC 3731343
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
||||| ||||| | || | |||||| |||| |||| ||| ||| || |||
Sbjct 3731342 AGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 3731283
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CT 120818
|| | ||||| || || |||||||||| ||| | || || || | | |||| |
Sbjct 3731282 AAGATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCA 3731223
Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTT 120848
|| |||||| | | |||||||||||||||
Sbjct 3731222 GT-GATCCAAGTAAGGGCCCACTCGGCCTT 3731194
>seq8
Length=2477967
Score = 125 bits (138), Expect = 7e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||| ||| ||||| || ||||| ||| | ||| ||||||||||||||||||
Sbjct 2273345 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 2273286
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | ||||| |||||||| ||||||||||||||||| |||||| |||
Sbjct 2273285 GGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTT 2273226
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| || || ||
Sbjct 2273225 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 2273166
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 2273165 CTTGACGAAGATCTGCATG 2273147
>seq3
Length=5106013
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| || | || || || || ||||||||||| ||||| ||||||
Sbjct 1582876 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTG 1582935
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | || | ||||||| | |||||| |||| ||||| |
Sbjct 1582936 TCCTGGATCTTGGACTTAACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATG 1582995
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659
|| ||||| || || || || ||||| |||||||
Sbjct 1582996 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCA 1583029
>seq4
Length=3212107
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || ||||| |||| || || | | | ||||| | |||||||||
Sbjct 2383851 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCA-TCCTCCAACTGCTTGCC 2383793
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||| || || || || || ||||||||||| |||||| |||
Sbjct 2383792 AGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGGATCTTGCTCTT 2383733
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || || | | ||| || |||| ||||| || || || |||| ||
Sbjct 2383732 GACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGT 2383673
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 2383672 CTTGACGAAGATCTGCAT 2383655
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCT 133515
||| | ||| ||||||||||| || ||||| || | || | | | | | ||||| | ||
Sbjct 2383630 ATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCA-TCCTCCAACT 2383572
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| || | || | || || ||||| ||||| || || |||||||| ||||
Sbjct 2383571 GCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCT 2383512
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | |||| || || | | ||| || || | |||| ||| || ||||
Sbjct 2383511 TGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGG 2383452
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
||| ||| || || || || |||||
Sbjct 2383451 TCAAAGTCTTGACAAAGATTTGCAT 2383427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420612674440
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