Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 seq8 125 7e-24 seq3 107 2e-18 seq4 89.7 5e-13 >seq2 Length=5746313 Score = 257 bits (284), Expect = 2e-63 Identities = 1204/1881 (64%), Gaps = 77/1881 (4%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997 ||| |||| || ||||| || ||||||||||||||||| ||||| | ||| | Sbjct 597860 GGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGT 597801 Query 147998 GTCGTGCACCGACGACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGA 148054 | ||||| || ||| | || | || |||| | ||| | || || || Sbjct 597800 GAAGTGCATGCTCG---TGATCTTGCCCATGGTGGGGTCCCGCATGTGGATGTTCAAAGA 597744 Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTTAT 148111 |||| ||||| ||||| || |||||||| || ||||| | ||| | ||||| Sbjct 597743 CTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGA 597684 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 |||||||| | ||||||||||| |||||| | | |||||| | ||| Sbjct 597683 G---ATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTT 597627 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||| | || || | | |||| || |||| ||| | ||| | | || | Sbjct 597626 CTGGATGGAACCACCCTCAGCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCAT 597567 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 |||| ||||| | | ||| | | || |||||||| |||||||| || || || || Sbjct 597566 GTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACG 597507 Query 148292 CCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || ||| || | |||| ||| | || || || ||||||||||||||| ||||| | Sbjct 597506 ACG-AGAGTAGATGTTGGATGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAG 597448 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTT--T 148408 || | || |||||||| || | || ||| |||||| | ||| ||| | | Sbjct 597447 ATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGTTGCGGACACC---ATTCTGCT 597391 Query 148409 TATTTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467 | | ||| | || || | |||||||||| || || || || ||||||||||||| Sbjct 597390 TGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGT 597331 Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 |||| || || || || || | || ||||||||| | | ||| ||||| ||| Sbjct 597330 CGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCT 597271 Query 148528 CCGCCGCCAGTTC----GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583 || || | || | |||| || || || || | |||||| |||||| || Sbjct 597270 CCTTGGCGATCTCCATGGAAGCT---GTCAAG-GCACCATGGTAAATGGTCTCGAAGATC 597215 Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAAC 148640 ||| |||||||| || || |||| ||| | ||||| || || | ||| Sbjct 597214 TGCTTGTTGAGCTGCCTAGC---CTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAA 597158 Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700 || || ||||| || || || || | ||| ||||| |||||| |||||| | |||| Sbjct 597157 GCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGC 597098 Query 148701 GCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCAC 148759 || |||| || | || |||| |||| || |||||||||| || |||||||| || Sbjct 597097 GC-CTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTGCGCACAACAGT 597039 Query 148760 CTTTGTAATTCTGCGCAGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCG 148813 || || | | ||||| || ||| | || || || | ||| | | Sbjct 597038 CTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGA 596979 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 | || || | |||||| | |||||| ||||| |||||| || || ||| || | Sbjct 596978 GGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAAT 596919 Query 148874 GATCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930 |||||||| ||| ||||| ||||| ||| ||||| ||||||||| || ||||| Sbjct 596918 GATCTCGGTGCAGAGATTAGAGCTGC---GGATGGTGCCCAGGTTCTTTTGGTTACTCTT 596862 Query 148931 GCTGTT-GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 || ||| ||| | ||||||||| |||||| | || ||||| || ||| | |||| Sbjct 596861 GCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCA 596803 Query 148990 CTATGAACCGATGC---AGGTCCTGCGCGCGCACTTGCT-GCTCGTAG----CGACCCTC 149041 || | | || | || | ||| || |||| | | || | || ||||| Sbjct 596802 GAAT-AGC--ATACCAGAGCTTCTGGGC-----CTTGATCTTTTGTCGACCTCGGCCCTC 596751 Query 149042 CTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099 |||||| | ||| | || ||||||| | |||||||| |||| | || || Sbjct 596750 GGCCTCGTACTTCTCGTAGAGGGC--CTCGAACTCATCGCCGTAAACATCGGCCAGGCCA 596693 Query 149100 GGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAAC 149159 ||||||| | |||||||| |||| |||| | |||| | | || || ||||| || Sbjct 596692 GGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAG 596633 Query 149160 AGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATG 149219 |||||||| | |||||| || | || ||||| || | ||||| || | Sbjct 596632 AGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGG 596573 Query 149220 TTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279 || || || | || | || | || | |||||| ||||| | || | || Sbjct 596572 TTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCA 596513 Query 149280 AGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336 | || || ||| ||||| || |||||||||| || | ||||||| ||||| Sbjct 596512 AAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACG 596453 Query 149337 CGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGC 149396 |||| ||| || |||| ||| ||| || ||||| ||| | || | |||| | Sbjct 596452 CGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTC 596393 Query 149397 GCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-A 149455 || || | ||| | ||||| ||||| || ||| | ||| ||||| |||| | Sbjct 596392 GCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAA 596333 Query 149456 GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515 ||| ||| || || || || || |||||||| ||||||| | || ||||| Sbjct 596332 GTC-TTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCA 596274 Query 149516 CGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575 || ||| || | |||| || || ||||| || || ||||||||| || Sbjct 596273 AGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA 596214 Query 149576 ATA-TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634 || || |||| ||| | | ||| | ||| | || | || ||||| || || || Sbjct 596213 GTACTTGCTGG-ACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGA 596155 Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694 | || | || || ||||| | ||||||||| |||| |||| | | ||| || | Sbjct 596154 TACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCT 596095 Query 149695 TGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGC 149754 | || | || || | |||||| |||| ||||| | ||||| ||||| ||| Sbjct 596094 TCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGT 596035 Query 149755 CGTGGTCAATGGCGGCGTCGa 149775 ||| | ||||||||| ||||| Sbjct 596034 CGTAGACAATGGCGGAGTCGA 596014 Score = 147 bits (162), Expect = 2e-30 Identities = 343/510 (67%), Gaps = 27/510 (5%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||| ||||| |||||||| ||||| || ||||| ||| || ||||| | Sbjct 3731688 CTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTC 3731629 Query 120411 CATAAACTCGAACGGGTTGCT--CGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| |||||| | |||| || | | ||| | ||| | | ||| Sbjct 3731628 CATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCG--TTGCCGAGAGCAAGGAGG 3731571 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || |||||||| |||||||||||||| | |||| | | |||||| ||||||| Sbjct 3731570 AGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGG 3731511 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || || | ||| || || ||||| | |||||| | || || || ||| || Sbjct 3731510 GCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTGA---TG 3731454 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGT--GTTCGATGCGCGTTC----GGTAGTACAG- 120641 || | ||| | | |||| | |||| | ||| || || |||| Sbjct 3731453 ------ATCTTCTGGACCTTCTCCTTGCTGGGGCGATTC---TTCAGGTGGGAGAACAGC 3731403 Query 120642 --GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||| |||||||| ||||| ||||||||||| ||||| |||| ||||||| || ||| Sbjct 3731402 AGGCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTC 3731343 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 3731342 AGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 3731283 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CT 120818 || | ||||| || || |||||||||| ||| | || || || | | |||| | Sbjct 3731282 AAGATACCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCA 3731223 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTT 120848 || |||||| | | ||||||||||||||| Sbjct 3731222 GT-GATCCAAGTAAGGGCCCACTCGGCCTT 3731194 >seq8 Length=2477967 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 2273345 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 2273286 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||| |||||||| ||||||||||||||||| |||||| ||| Sbjct 2273285 GGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTT 2273226 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| || || || Sbjct 2273225 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 2273166 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 2273165 CTTGACGAAGATCTGCATG 2273147 >seq3 Length=5106013 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || || || ||||||||||| ||||| |||||| Sbjct 1582876 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTG 1582935 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||||| | |||||| |||| ||||| | Sbjct 1582936 TCCTGGATCTTGGACTTAACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATG 1582995 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || ||||| || || || || ||||| ||||||| Sbjct 1582996 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCA 1583029 >seq4 Length=3212107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| |||| || || | | | ||||| | ||||||||| Sbjct 2383851 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCA-TCCTCCAACTGCTTGCC 2383793 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || || || || || ||||||||||| |||||| ||| Sbjct 2383792 AGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGGATCTTGCTCTT 2383733 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | ||| || |||| ||||| || || || |||| || Sbjct 2383732 GACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGT 2383673 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2383672 CTTGACGAAGATCTGCAT 2383655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || ||||| || | || | | | | | ||||| | || Sbjct 2383630 ATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCA-TCCTCCAACT 2383572 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || || ||||| ||||| || || |||||||| |||| Sbjct 2383571 GCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCT 2383512 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| || || | | ||| || || | |||| ||| || |||| Sbjct 2383511 TGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGG 2383452 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||| || || || || ||||| Sbjct 2383451 TCAAAGTCTTGACAAAGATTTGCAT 2383427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420612674440