Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-23 >seq2 Length=5746313 Score = 125 bits (138), Expect = 2e-23 Identities = 316/478 (66%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 |||||||| ||| | | || || ||||| ||||| ||||||||||| | || || Sbjct 596271 TCTTGCTTCCTTGTCGACATGAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAG 596330 Query 110580 GAAACTGCTC--TTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC 110637 | ||| | | || || || | | || || || ||| | || | || ||||| Sbjct 596331 --ACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTC 596388 Query 110638 GCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGT 110697 | | | || | ||||||| | || ||| | || | ||| ||||||| ||| Sbjct 596389 GTGCGACCGGCTCTTATATCGCCGGTACCAACGGTACATCCAATGGTATTGTTCCCATGC 596448 Query 110698 TAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCT 110754 | | || |||||| ||||||| ||| || | |||||||| || | || ||| Sbjct 596449 TTCGCGTGTTCAACAACACTGCTCGATACGTCGACCAAGGTGGCAACAAGCGACCTGGTG 596508 Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 | ||||||||||||||||| || ||||| || ||| | ||||| ||| | || || || | Sbjct 596509 CCTTTGCTATCTATCTCGAGCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAA 596568 Query 110815 AAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 | || || || ||||| | || || ||| | || ||| | |||||| | | Sbjct 596569 AGAACCATGGTAAAGAAGAGGTCCGCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCG 596628 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 || | ||||||||||||||| | | || || |||| | |||||||| || || | Sbjct 596629 ATCTCTTCATGAAACGTGTTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGT 596688 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGA 110992 ||||| || | ||||| || || | ||||| || | ||| ||||| || || || Sbjct 596689 GCCCTGGCCTGGCCGATGTTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGA 596746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812328612791