Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq12 120 4e-21
seq2 109 8e-18
>seq12
Length=1385634
Score = 120 bits (132), Expect = 4e-21
Identities = 183/258 (71%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911
|| ||||| || || ||| | | ||||||||||| || || |||||| | |||||||
Sbjct 680335 TGCGCGTCCGTCAGCCGCCCGTACCGCAGGATGGCGCACCGCGACTGCAGCGGCTCGATG 680276
Query 332912 ACCATTGACGACGTG-TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCAT 332970
| | ||| | || ||||| || | ||| || |||||||| |||| | | |||||
Sbjct 680275 ATC-TTGTTGCTCTGGTTGCACGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCAT 680217
Query 332971 GGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGAT 333030
||| ||||| ||||| || || ||| ||| | || |||||||||||||||||| |
Sbjct 680216 GGTGCGGCGGAGCGCCTGCTGCGCGCCCGACGTCATGCTGTCGGCCTCGTCGAGGATCAC 680157
Query 333031 GATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTT 333090
|| ||||||||| ||| || || ||| | ||| |||| | |||||| ||
Sbjct 680156 GAGCTTGTGGCGGCCGGCGGGGAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGGTT 680097
Query 333091 GCGCACGACGTCCACGCC 333108
||| |||||||| | |||
Sbjct 680096 GCGGACGACGTCGATGCC 680079
Score = 86.0 bits (94), Expect = 9e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 332515 GCCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGC 332574
|||| | || | |||||| | | ||||||||||||||||||||||||||||| |||||
Sbjct 680477 GCCGGACCCGGCGTGCGTCGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGC 680418
Query 332575 CGTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616
|| || ||| | ||| |||| || || ||| || || ||||
Sbjct 680417 CGCGAACACCAGCGCCGCCAGCCCGTCATCGCTGTACGCCAC 680376
>seq2
Length=5746313
Score = 109 bits (120), Expect = 8e-18
Identities = 199/289 (69%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952
|||||| ||||| || ||||| || | || || || || || || || ||||| |
Sbjct 596198 CATGTC-CAGCAAGTACTTCACACACGCCTCTCCTACTCTGTTCAACGCTGGTACGCCCC 596256
Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012
| ||| || || ||||| || | |||||||||| || || || || || |
Sbjct 596257 AGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAGGATGACAGCATTGATGGTATTT 596316
Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
||||||| |||||| ||||| | ||||||||| |||||| || |||||| | |
Sbjct 596317 ATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGTCTCAACA 596376
Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132
||| | || || | ||| | || | || || |||||||| ||||| ||
Sbjct 596377 TCCACCGTATTCGTGCGACCGGCTCTTATATCGCCGGTACCAACGGTACATCCAATGGTA 596436
Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181
|||| |||||||||||||| || ||| |||| || || |||||||||||
Sbjct 596437 TTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTCGATACGTCGACCA 596485
Score = 95.1 bits (104), Expect = 2e-13
Identities = 179/258 (69%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|| |||||||| || || |||| || ||| ||||||| | | ||| | || ||
Sbjct 3731447 AGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGACAGAGGCCCTCCCTT 3731506
Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637
|| || | || |||||| ||| | |||||| || |||||||| ||| || || ||
Sbjct 3731507 GCGCCCTGCTGGGAATGAACTCCAAC-CTCATGAAGCAATACATTGAGTTT-GTTGCGGA 3731564
Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697
||| || ||| || |||||| || ||||| ||||| | ||||||| ||| |
Sbjct 3731565 CCGTCTCCTCCTTGCTCTCGGCAACG-AGAAGGTGTACCGCGCCACCAACCCCTTCGACT 3731623
Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGT 1456756
|||||| ||||| || | |||||||||||||| || ||| ||||| ||||| |
Sbjct 3731624 TCATGGAGAACATCTCTCTGGGAGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAAT 3731683
Query 1456757 ACGCCAAGGCCGGCGTCA 1456774
|| ||||| || ||||
Sbjct 3731684 ACCAGAAGGCTGGTGTCA 3731701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808209993022
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |