Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12 120 4e-21 seq2 109 8e-18 >seq12 Length=1385634 Score = 120 bits (132), Expect = 4e-21 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 || ||||| || || ||| | | ||||||||||| || || |||||| | ||||||| Sbjct 680335 TGCGCGTCCGTCAGCCGCCCGTACCGCAGGATGGCGCACCGCGACTGCAGCGGCTCGATG 680276 Query 332912 ACCATTGACGACGTG-TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCAT 332970 | | ||| | || ||||| || | ||| || |||||||| |||| | | ||||| Sbjct 680275 ATC-TTGTTGCTCTGGTTGCACGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCAT 680217 Query 332971 GGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGAT 333030 ||| ||||| ||||| || || ||| ||| | || |||||||||||||||||| | Sbjct 680216 GGTGCGGCGGAGCGCCTGCTGCGCGCCCGACGTCATGCTGTCGGCCTCGTCGAGGATCAC 680157 Query 333031 GATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTT 333090 || ||||||||| ||| || || ||| | ||| |||| | |||||| || Sbjct 680156 GAGCTTGTGGCGGCCGGCGGGGAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGGTT 680097 Query 333091 GCGCACGACGTCCACGCC 333108 ||| |||||||| | ||| Sbjct 680096 GCGGACGACGTCGATGCC 680079 Score = 86.0 bits (94), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 332515 GCCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGC 332574 |||| | || | |||||| | | ||||||||||||||||||||||||||||| ||||| Sbjct 680477 GCCGGACCCGGCGTGCGTCGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGC 680418 Query 332575 CGTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616 || || ||| | ||| |||| || || ||| || || |||| Sbjct 680417 CGCGAACACCAGCGCCGCCAGCCCGTCATCGCTGTACGCCAC 680376 >seq2 Length=5746313 Score = 109 bits (120), Expect = 8e-18 Identities = 199/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| || ||||| || | || || || || || || || ||||| | Sbjct 596198 CATGTC-CAGCAAGTACTTCACACACGCCTCTCCTACTCTGTTCAACGCTGGTACGCCCC 596256 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| || | |||||||||| || || || || || | Sbjct 596257 AGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAGGATGACAGCATTGATGGTATTT 596316 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 ||||||| |||||| ||||| | ||||||||| |||||| || |||||| | | Sbjct 596317 ATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGTCTCAACA 596376 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || || | ||| | || | || || |||||||| ||||| || Sbjct 596377 TCCACCGTATTCGTGCGACCGGCTCTTATATCGCCGGTACCAACGGTACATCCAATGGTA 596436 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||| |||||||||||||| || ||| |||| || || ||||||||||| Sbjct 596437 TTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTCGATACGTCGACCA 596485 Score = 95.1 bits (104), Expect = 2e-13 Identities = 179/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| || || |||| || ||| ||||||| | | ||| | || || Sbjct 3731447 AGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGACAGAGGCCCTCCCTT 3731506 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || || | || |||||| ||| | |||||| || |||||||| ||| || || || Sbjct 3731507 GCGCCCTGCTGGGAATGAACTCCAAC-CTCATGAAGCAATACATTGAGTTT-GTTGCGGA 3731564 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||| || ||| || |||||| || ||||| ||||| | ||||||| ||| | Sbjct 3731565 CCGTCTCCTCCTTGCTCTCGGCAACG-AGAAGGTGTACCGCGCCACCAACCCCTTCGACT 3731623 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGT 1456756 |||||| ||||| || | |||||||||||||| || ||| ||||| ||||| | Sbjct 3731624 TCATGGAGAACATCTCTCTGGGAGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAAT 3731683 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 3731684 ACCAGAAGGCTGGTGTCA 3731701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808209993022