Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq4 105 6e-18
>seq4
Length=3212107
Score = 105 bits (116), Expect = 6e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| ||| |||||| || | || |||| |||||| || |||||
Sbjct 2383845 TCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAG 2383786
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||| || |||| |||| | ||||||||| |||||| ||| | |||
Sbjct 2383785 ATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTT 2383727
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | || || ||| || ||||| | |||||||| || |||||||| || || ||
Sbjct 2383726 GTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGAC 2383667
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 2383666 GAAGATCTGCAT 2383655
Score = 89.7 bits (98), Expect = 5e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||||||||||||||| |||| | ||| || | || |||||||||||||| || ||
Sbjct 2383389 TCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAG 2383330
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| ||||| ||||| | || | || ||||||||| ||||| ||| | | |
Sbjct 2383329 ATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTG 2383270
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | |||||| ||| || ||||| | || || || || || ||
Sbjct 2383269 TCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGT 2383223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793425317480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |