Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8 131 2e-25 seq4 127 2e-24 seq3 93.3 4e-14 >seq8 Length=2477967 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| |||||||| || ||| ||||| || |||||||||||| Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || ||||| ||||| || |||||||| Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | |||||||| || ||||| Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 2273195 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 2273194 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148 >seq4 Length=3212107 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||||||||||||||||||||||||| | ||| | Sbjct 2383416 AGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGT 2383357 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || ||||| ||||| || || ||||| ||||| || Sbjct 2383356 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCC 2383297 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| ||| | ||||||||||| || || || || ||| Sbjct 2383296 TTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTA 2383237 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || || || | || || |||| Sbjct 2383236 ATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || ||| ||||| || ||||||||||| Sbjct 2383132 CCTCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 2383073 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||| ||||| ||||||||||| || || ||||| Sbjct 2383072 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGG 2383013 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | |||||||| || || || Sbjct 2383012 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACC 2382953 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| | || || ||||| || ||||| Sbjct 2382952 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2382906 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||| |||||||||||||||| Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||| ||||| ||||| || | |||||| ||||| || || Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | || || ||||| || || Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACC 2383702 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || || || ||||| || ||||| Sbjct 2383701 TCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 >seq3 Length=5106013 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | || || ||||| ||||| ||||| | Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| || || || ||||| || ||||| || || || || || || || || || Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||||||||| ||||| ||||| || ||||| || || || | || || |||| Sbjct 1582961 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 1583020 Query 134704 AAATTTGCA 134712 | || |||| Sbjct 1583021 AGATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398204158120