Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 208 1e-48
>seq2
Length=5746313
Score = 208 bits (230), Expect = 1e-48
Identities = 970/1521 (64%), Gaps = 38/1521 (2%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|| || || |||| || || | ||||| ||| || || ||||| || || | | |
Sbjct 597529 TGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACAC 597470
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|| || || ||||| || |||| || ||||| |||||||| |||| ||| | |||
Sbjct 597469 TCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTG 597410
Query 68839 TTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897
|| | | ||||| || | |||| | ||||| || | ||| |||||||| |||||
Sbjct 597409 TTGCGGACACCATTCTGCT-TGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGA 597351
Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957
||| || ||||| | ||||||||||| || || | || ||| || | ||
Sbjct 597350 TGGGGTGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTA 597291
Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCT-AATGCACCGTAAT 69016
|| || ||||||| || | || | || || || | || ||||| | |
Sbjct 597290 GGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTC-CATGGAAGCTGTCAAGGCACCATGGT 597232
Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076
|||| || ||||| |||| ||| ||||| | || || || ||||| || ||
Sbjct 597231 AAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGC--AT 597174
Query 69077 GTAAAAGAATA--AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134
| | | || || ||||| || | || || || || | ||||| || | ||||
Sbjct 597173 GCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCG 597114
Query 69135 CTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193
| | || | || | || ||| ||| ||| || || || | ||| || || || || |
Sbjct 597113 CATGTT-GCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCA 597055
Query 69194 GATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC-- 69251
| || || || || | ||||| | || || |||| ||| | || |
Sbjct 597054 GGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGT 596995
Query 69252 TATA----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307
| || || ||| ||| || | ||| || | ||| || || || ||||||| ||
Sbjct 596994 TGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAG 596935
Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367
| |||| || ||||| || || |||||| | ||| || ||||| || |
Sbjct 596934 GTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCT 596875
Query 69368 GCTGATTACTCTTTTTGTTA-CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426
|| |||||||| ||| || | ||||||||| || || || || ||||||| ||
Sbjct 596874 TTTGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCG 596816
Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486
|||| | || | ||||| | ||| | | || || || | |||| |
Sbjct 596815 GTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATC----TTTTGTCGACC 596760
Query 69487 TT----CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCA 69540
| ||| || || || | ||| | ||| ||||| ||||| || |||||||
Sbjct 596759 TCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCC--TCGAACTCATCGCCGTAAACATCG 596702
Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600
||| ||||| || ||||| || ||||| | | |||| | | | | || ||| |||
Sbjct 596701 GCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGT 596642
Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660
||||| || |||||||||||||| || || | || ||||| | | | |||||
Sbjct 596641 TTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCT 596582
Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720
|| || || ||| ||||| || ||||| | | ||| || ||||| || || |||
Sbjct 596581 TTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGA 596522
Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780
|| || || | | | || ||||| || || || || || || | ||||| ||||||||
Sbjct 596521 TAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTG 596462
Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840
|| | || | ||||| |||| ||||||||| ||| |||| || || || | ||||||
Sbjct 596461 TTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAA 596402
Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900
|| | || |||||| || ||||| || || || ||||| || |||||
Sbjct 596401 GAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATC 596342
Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960
| || ||| || | |||||||| ||||| || ||||| ||||| |||||| | |
Sbjct 596341 ATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACA 596282
Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020
|| || || |||| ||| || || || || || || | |||||||| |||
Sbjct 596281 AGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCG 596222
Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC---- 70076
|| ||||| | || || | || ||||| || |||||| | || || ||
Sbjct 596221 TGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCT 596162
Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136
|| | | || || | || |||||||| | ||||||||| |||| || || | ||
Sbjct 596161 CCCCAG----ATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTT 596106
Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196
||| | |||| || |||||| |||| ||| || || || || || | |||
Sbjct 596105 GCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTT 596046
Query 70197 AAAGTCTCTTTCGTAAATAAT 70217
||||| | ||||| | |||
Sbjct 596045 GAAGTCACGGTCGTAGACAAT 596025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908533822840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |