Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 208 1e-48 >seq2 Length=5746313 Score = 208 bits (230), Expect = 1e-48 Identities = 970/1521 (64%), Gaps = 38/1521 (2%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || || || |||| || || | ||||| ||| || || ||||| || || | | | Sbjct 597529 TGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACAC 597470 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || || || ||||| || |||| || ||||| |||||||| |||| ||| | ||| Sbjct 597469 TCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTG 597410 Query 68839 TTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897 || | | ||||| || | |||| | ||||| || | ||| |||||||| ||||| Sbjct 597409 TTGCGGACACCATTCTGCT-TGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGA 597351 Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957 ||| || ||||| | ||||||||||| || || | || ||| || | || Sbjct 597350 TGGGGTGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCGTA 597291 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCT-AATGCACCGTAAT 69016 || || ||||||| || | || | || || || | || ||||| | | Sbjct 597290 GGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTC-CATGGAAGCTGTCAAGGCACCATGGT 597232 Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076 |||| || ||||| |||| ||| ||||| | || || || ||||| || || Sbjct 597231 AAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGC--AT 597174 Query 69077 GTAAAAGAATA--AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | | || || ||||| || | || || || || | ||||| || | |||| Sbjct 597173 GCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCG 597114 Query 69135 CTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193 | | || | || | || ||| ||| ||| || || || | ||| || || || || | Sbjct 597113 CATGTT-GCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCA 597055 Query 69194 GATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC-- 69251 | || || || || | ||||| | || || |||| ||| | || | Sbjct 597054 GGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGT 596995 Query 69252 TATA----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 | || || ||| ||| || | ||| || | ||| || || || ||||||| || Sbjct 596994 TGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAG 596935 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | |||| || ||||| || || |||||| | ||| || ||||| || | Sbjct 596934 GTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCT 596875 Query 69368 GCTGATTACTCTTTTTGTTA-CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 || |||||||| ||| || | ||||||||| || || || || ||||||| || Sbjct 596874 TTTGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCG 596816 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486 |||| | || | ||||| | ||| | | || || || | |||| | Sbjct 596815 GTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATC----TTTTGTCGACC 596760 Query 69487 TT----CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCA 69540 | ||| || || || | ||| | ||| ||||| ||||| || ||||||| Sbjct 596759 TCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCC--TCGAACTCATCGCCGTAAACATCG 596702 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 ||| ||||| || ||||| || ||||| | | |||| | | | | || ||| ||| Sbjct 596701 GCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGT 596642 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || |||||||||||||| || || | || ||||| | | | ||||| Sbjct 596641 TTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGGACCTCTTCT 596582 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| ||||| || ||||| | | ||| || ||||| || || ||| Sbjct 596581 TTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGA 596522 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | | || ||||| || || || || || || | ||||| |||||||| Sbjct 596521 TAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGAGCAGTGTTG 596462 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | || | ||||| |||| ||||||||| ||| |||| || || || | |||||| Sbjct 596461 TTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAA 596402 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || |||||| || ||||| || || || ||||| || ||||| Sbjct 596401 GAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATC 596342 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | || ||| || | |||||||| ||||| || ||||| ||||| |||||| | | Sbjct 596341 ATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGACA 596282 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || || || |||| ||| || || || || || || | |||||||| ||| Sbjct 596281 AGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCG 596222 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC---- 70076 || ||||| | || || | || ||||| || |||||| | || || || Sbjct 596221 TGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCT 596162 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136 || | | || || | || |||||||| | ||||||||| |||| || || | || Sbjct 596161 CCCCAG----ATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACAATCTT 596106 Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196 ||| | |||| || |||||| |||| ||| || || || || || | ||| Sbjct 596105 GCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTT 596046 Query 70197 AAAGTCTCTTTCGTAAATAAT 70217 ||||| | ||||| | ||| Sbjct 596045 GAAGTCACGGTCGTAGACAAT 596025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908533822840