Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 242 5e-59
>seq2
Length=5746313
Score = 242 bits (268), Expect = 5e-59
Identities = 1147/1792 (64%), Gaps = 45/1792 (3%)
Strand=Plus/Minus
Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383
|||| | ||||||| || || |||| |||| | ||||| |||||||| || |||
Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTC 597824
Query 110384 TTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 110443
|| || ||| | ||||| | | ||||| | || |||| ||| || ||
Sbjct 597823 TTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTCGTGATCTTGCCCATGGTGGGGTCC 597764
Query 110444 TCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATA 110503
|||| || ||||| | || |||||| |||||| || || | || |||||
Sbjct 597763 CGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATC 597704
Query 110504 TCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560
| | || ||| || | || ||||| || || || || |||||| ||
Sbjct 597703 TGCACAACGG--TTCG-CTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCC 597647
Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA---GATCCTT 110616
| || || | | || |||||||||||||| ||| ||| || ||| ||| |||
Sbjct 597646 GCCGGAATGTTGGGAATGTTCTGGATGGAACCACCC----TCAGCAATGATACGATTCTT 597591
Query 110617 CATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAAT 110676
||| | | |||||| ||||| || | |||||| || | || |||||| |
Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531
Query 110677 GACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCA 110736
||||| || || ||| | | ||||||||| | ||| || || || || ||
Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACA 597471
Query 110737 TTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACT 110796
|| || || |||| ||| || | || ||| || ||||| || |||||||| |||||
Sbjct 597470 CTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACT 597411
Query 110797 GTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGC 110854
||| || | ||| |||| |||||| | || ||||| |||||||| | | | ||
Sbjct 597410 GTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGA 597351
Query 110855 TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCA 110914
| || | || |||| ||||||| | || || | || ||||| | || || |||||
Sbjct 597350 TGGGGTG-ACGTTCC-ACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCG 597293
Query 110915 AAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA 110974
|||| |||| ||||| | | || | || | || || || | ||
Sbjct 597292 TAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAGGCACCATGG 597233
Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTA 111033
|| ||||| || ||||| | || | || | | || || || || ||| || |
Sbjct 597232 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGCAT- 597174
Query 111034 GCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093
|||| | ||| |||| || |||||||| ||||| | || || || | ||||||
Sbjct 597173 GCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCG 597114
Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153
||| || || ||||| | ||| || || | || ||||||| ||| ||
Sbjct 597113 CATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAG 597054
Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC 111213
|| |||| ||| |||| || || || || | | | ||| | || |
Sbjct 597053 GTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTT 596994
Query 111214 TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT 111273
| | ||| || || || || | || ||||||||||| || || ||||||
Sbjct 596993 GTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGG 596934
Query 111274 ATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333
| | ||| || | || || || || | || || || || || |||| |||||
Sbjct 596933 TGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTT 596874
Query 111334 TTGGTTACTCTTCTTGTTG-CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCG 111392
|||||||||||| |||| || | ||||||||||||||| | || | || ||||| |
Sbjct 596873 TTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGG 596815
Query 111393 TCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC-CG 111450
|||| | | |||||||| | ||| | | || | | || | | | || | || ||
Sbjct 596814 TCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATC--TTTTGTCGACCTCG 596757
Query 111451 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 111510
||||| ||||||||||| ||||||||| || ||||| || || | |||| ||
Sbjct 596756 GCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAG 596697
Query 111511 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCAT 111570
|| || || | || || | ||| | ||| | || | |||||| || |||||
Sbjct 596696 GCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCAT 596637
Query 111571 GAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCAC 111629
||| || || |||||||| |||| | | ||| ||||| | | || ||||||| | ||
Sbjct 596636 GAAGAGATCGGGAATCCAGAGGGCAAGGAAA-AGATCGCGAGCGCGGACCTCTTCTTTAC 596578
Query 111630 CTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 111689
| ||||| ||| | || |||||||| | || ||| | |||||| ||||| |||||||
Sbjct 596577 CATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGA 596518
Query 111690 CTGCGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 111743
|| | || || ||| | | ||| |||| | || || || || ||| ||
Sbjct 596517 TAGCAAAGGCACCAGGTCGCTT--GTTG-CCACCTTGGTCGACGTATCGAGCAGTGTTGT 596461
Query 111744 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 111803
| || ||||||||||| |||| |||||||| ||| ||| || || || ||| ||
Sbjct 596460 TGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAG 596401
Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT-- 111861
| | || | | | ||||||| | || ||||| || ||| ||| |||||
Sbjct 596400 AGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCA 596341
Query 111862 TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGAT 111921
| ||||| | | | | || || |||| ||||| | || ||| ||||| || |||
Sbjct 596340 TGGCGCA-AGT-CTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGAC 596283
Query 111922 AAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 111981
|||||||||| |||| ||| | || |||||||| ||||| || || || | ||
Sbjct 596282 AAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGC 596223
Query 111982 GTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039
||| |||| || |||| |||||| || ||| ||||| | || || |||||
Sbjct 596222 GTGTGTGAA-GTA-CTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCG 596165
Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCA 112091
|| || ||| || | || || ||||||| ||| | |||||| | ||||
Sbjct 596164 TCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCA 596113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031756637600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |