Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 242 5e-59 >seq2 Length=5746313 Score = 242 bits (268), Expect = 5e-59 Identities = 1147/1792 (64%), Gaps = 45/1792 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | ||||||| || || |||| |||| | ||||| |||||||| || ||| Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTC 597824 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 110443 || || ||| | ||||| | | ||||| | || |||| ||| || || Sbjct 597823 TTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTCGTGATCTTGCCCATGGTGGGGTCC 597764 Query 110444 TCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATA 110503 |||| || ||||| | || |||||| |||||| || || | || ||||| Sbjct 597763 CGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGCCATC 597704 Query 110504 TCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 | | || ||| || | || ||||| || || || || |||||| || Sbjct 597703 TGCACAACGG--TTCG-CTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTCC 597647 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA---GATCCTT 110616 | || || | | || |||||||||||||| ||| ||| || ||| ||| ||| Sbjct 597646 GCCGGAATGTTGGGAATGTTCTGGATGGAACCACCC----TCAGCAATGATACGATTCTT 597591 Query 110617 CATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAAT 110676 ||| | | |||||| ||||| || | |||||| || | || |||||| | Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531 Query 110677 GACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCA 110736 ||||| || || ||| | | ||||||||| | ||| || || || || || Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACA 597471 Query 110737 TTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACT 110796 || || || |||| ||| || | || ||| || ||||| || |||||||| ||||| Sbjct 597470 CTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACT 597411 Query 110797 GTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGC 110854 ||| || | ||| |||| |||||| | || ||||| |||||||| | | | || Sbjct 597410 GTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAGA 597351 Query 110855 TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCA 110914 | || | || |||| ||||||| | || || | || ||||| | || || ||||| Sbjct 597350 TGGGGTG-ACGTTCC-ACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAGCCCTCG 597293 Query 110915 AAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||||| | | || | || | || || || | || Sbjct 597292 TAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAGGCACCATGG 597233 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTA 111033 || ||||| || ||||| | || | || | | || || || || ||| || | Sbjct 597232 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACTCGAAAGGCAT- 597174 Query 111034 GCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 |||| | ||| |||| || |||||||| ||||| | || || || | |||||| Sbjct 597173 GCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACGGTGTCG 597114 Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 ||| || || ||||| | ||| || || | || ||||||| ||| || Sbjct 597113 CATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGATCTTGTTCAG 597054 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC 111213 || |||| ||| |||| || || || || | | | ||| | || | Sbjct 597053 GTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGACGCCCTGGTT 596994 Query 111214 TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT 111273 | | ||| || || || || | || ||||||||||| || || |||||| Sbjct 596993 GTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGACCTCATCAGG 596934 Query 111274 ATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333 | | ||| || | || || || || | || || || || || |||| ||||| Sbjct 596933 TGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGGATGGTGCCCAGGTTCTT 596874 Query 111334 TTGGTTACTCTTCTTGTTG-CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCG 111392 |||||||||||| |||| || | ||||||||||||||| | || | || ||||| | Sbjct 596873 TTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGG 596815 Query 111393 TCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC-CG 111450 |||| | | |||||||| | ||| | | || | | || | | | || | || || Sbjct 596814 TCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATC--TTTTGTCGACCTCG 596757 Query 111451 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 111510 ||||| ||||||||||| ||||||||| || ||||| || || | |||| || Sbjct 596756 GCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATCGGCCAG 596697 Query 111511 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCAT 111570 || || || | || || | ||| | ||| | || | |||||| || ||||| Sbjct 596696 GCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCAT 596637 Query 111571 GAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCAC 111629 ||| || || |||||||| |||| | | ||| ||||| | | || ||||||| | || Sbjct 596636 GAAGAGATCGGGAATCCAGAGGGCAAGGAAA-AGATCGCGAGCGCGGACCTCTTCTTTAC 596578 Query 111630 CTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 111689 | ||||| ||| | || |||||||| | || ||| | |||||| ||||| ||||||| Sbjct 596577 CATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGA 596518 Query 111690 CTGCGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 111743 || | || || ||| | | ||| |||| | || || || || ||| || Sbjct 596517 TAGCAAAGGCACCAGGTCGCTT--GTTG-CCACCTTGGTCGACGTATCGAGCAGTGTTGT 596461 Query 111744 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 111803 | || ||||||||||| |||| |||||||| ||| ||| || || || ||| || Sbjct 596460 TGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCGGCGATATAAG 596401 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT-- 111861 | | || | | | ||||||| | || ||||| || ||| ||| ||||| Sbjct 596400 AGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATCTTGGAGATCA 596341 Query 111862 TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGAT 111921 | ||||| | | | | || || |||| ||||| | || ||| ||||| || ||| Sbjct 596340 TGGCGCA-AGT-CTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTCATGTCGAC 596283 Query 111922 AAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 111981 |||||||||| |||| ||| | || |||||||| ||||| || || || | || Sbjct 596282 AAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGC 596223 Query 111982 GTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039 ||| |||| || |||| |||||| || ||| ||||| | || || ||||| Sbjct 596222 GTGTGTGAA-GTA-CTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCGATGTCG 596165 Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCA 112091 || || ||| || | || || ||||||| ||| | |||||| | |||| Sbjct 596164 TCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCA 596113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031756637600