Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 199 5e-46 >seq2 Length=5746313 Score = 199 bits (220), Expect = 5e-46 Identities = 1070/1685 (64%), Gaps = 51/1685 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| |||||||| || || |||||||| | | ||||| | Sbjct 597844 CGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTCGTG 597785 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | ||| || |||| || ||||| | |||||||| ||||||||| Sbjct 597784 ATCTTGCCCATGGTGGGGTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAG 597725 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGTC 118013 || || || || ||||| | |||| | | || ||| |||||||| ||| Sbjct 597724 GCACCACGGTCGGCAGCCATCTG---CACAACGGTTCGCTGAGAGATCTCCCACACGGTC 597668 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| ||| ||| || || | || || | || || |||||||| |||||| | Sbjct 597667 TTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCA 597608 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| |||||| | | ||||| ||||| || | ||| |||| || Sbjct 597607 GCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGC 597548 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGT 118192 || ||||| || ||||| || || ||| || | ||| ||||| |||| Sbjct 597547 AGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACG-AGAGTAGATGTTGGA 597489 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 || || ||||| || ||||| ||||| |||| ||| || | ||| ||| |||||||| Sbjct 597488 TGTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCAT 597429 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 || ||||| | || ||||| |||| ||| || | | | || | || ||||| || Sbjct 597428 AGGAGCCATCAACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCTC 597369 Query 118313 CCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||| | | | || | | | | |||||| || | || |||||||| ||| Sbjct 597368 CCAGTCCCAAAGGTCAGATGGGGTGACG--TTCCACATGTCGTATTGTAGGATACCCTGG 597311 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC----GGA 118426 || | || || ||||| | || || || || | ||| || | || | | Sbjct 597310 GAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAA 597251 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGG 118485 ||| | | ||| | || || || || || || || | || | ||||| | Sbjct 597250 GCTGTC----AAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAG- 597196 Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 118545 ||||| || || || | | ||| | ||| |||| || ||||||||||||| Sbjct 597195 CCTCGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACAC 597136 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAAT 118605 ||||||| || || || |||| ||| || || || || | || || || | | Sbjct 597135 CGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGT 597076 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC---CTTTGTGATTTCATGAAGCT 118662 | ||| || | | | || || || | ||||| || |||| || || |||| Sbjct 597075 TGACATCAATGATCTTGTTCAGGTT---GCGCACAACAGTCTGCGTGACGTCGTGCAGCT 597019 Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 | | | ||| | || | | | ||| || || || || | || |||| Sbjct 597018 TCTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCA 596959 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 ||| || || | | |||||| | | ||| || || || || ||||| | || | Sbjct 596958 AATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAG 596899 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA-CACGCATCCTTGTAA 118841 | || |||||||||| ||||||||| || ||| ||| || | |||||||| Sbjct 596898 AGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAG 596840 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 118900 |||||| | || | || ||||| || |||| || |||||||| | ||||| | || | Sbjct 596839 AGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGG 596780 Query 118901 AGCTGGCACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAA 118959 || | | | | | | | ||| ||||| |||||||||| ||||||||| || | Sbjct 596779 GCCTTGATCTTTTG--TCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGA 596722 Query 118960 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 |||| || || | || | || || || || || ||||| | || | ||| | Sbjct 596721 ACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACT 596662 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 119079 || || |||||| || ||||||||||| || || |||||||| || ||| |||| Sbjct 596661 CTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGAT 596602 Query 119080 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 119139 | ||| ||| | ||||| | || || || || | |||| || || | || || Sbjct 596601 CGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACAT 596542 Query 119140 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCT 119193 | | |||||| || || || || | || | | || | | || ||| | | Sbjct 596541 CGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACC---AGGTCGCTTGTTGCCACCTT 596485 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| || || | |||||| ||| || || |||||||| |||| ||||||| |||| Sbjct 596484 GGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATG 596425 Query 119254 GGCCATTTGTCCCC-CGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311 || || || || ||| ||| ||| | | || | | | |||||||| | ||| Sbjct 596424 TACCGTTGGTACCGGCGATATAAGAGCCGG--TCGCACGAATACGGTGGATGTTGAGACC 596367 Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371 ||||| || ||| ||| ||||| ||||| | |||| || | || || ||||| Sbjct 596366 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATC 596307 Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431 || |||| |||| | ||| |||||||| |||| |||| | ||| ||||| Sbjct 596306 AATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACC 596247 Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAG 119489 ||||||||| ||||| || | ||||| |||| || |||| |||||| || ||| Sbjct 596246 AGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAA-GTA-CTTGCTGGACATGAGGTTGTAA 596189 Query 119490 GTCTC 119494 ||||| Sbjct 596188 GTCTC 596184 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || ||||||||||| ||||| | || || |||||| ||| || Sbjct 3731396 GCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCA 3731337 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | |||||| || | || | || ||||||||| Sbjct 3731336 GGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATA 3731277 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| ||| ||||| || | | || | |||||||| Sbjct 3731276 CCCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGG 3731237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434960356360