Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 277 2e-69
seq7 102 1e-16
>seq2
Length=5746313
Score = 277 bits (306), Expect = 2e-69
Identities = 1012/1547 (65%), Gaps = 57/1547 (4%)
Strand=Plus/Plus
Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273
|||| | |||||| | ||| ||||||| || || | ||||| || || ||||| |
Sbjct 596113 TGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCG 596172
Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 104331
| || | ||||| ||| || |||||| |||| || |||| ||||| | ||
Sbjct 596173 AGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAG-TAC-TTCACACACGCCTCTCC 596230
Query 104332 AACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA 104391
|| || ||||| |||||||| || | || |||| |||||||||| ||| ||
Sbjct 596231 TACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACAT 596290
Query 104392 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCA 104449
||||| ||| || | ||||| |||| || || | | | | ||||| | |||||
Sbjct 596291 GAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAG-ACT-TGCGCCATGATCTCC 596348
Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509
||| ||| || ||||| || | ||||||| | | | || | ||| |||
Sbjct 596349 AAGATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATC 596408
Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569
|| || || ||| ||| |||||||| |||| ||||||||||| || ||| |||
Sbjct 596409 GCCGGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACT 596468
Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTT 104623
|| || || || | |||| ||| | | ||| || || | || |||||||
Sbjct 596469 GCTCGATACGTCGACCAAGGTGG-CAAC--AAGCGACCTGGTGCCTTTGCTATCTATCTC 596525
Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683
||||| |||||| | ||| || | |||||||| || | || ||||| ||| | ||
Sbjct 596526 GAGCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAA 596585
Query 104684 GAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741
|||| |||| | |||||||| ||| || ||||||||||| ||||||||||||||
Sbjct 596586 GAGGTCCGCGCT--CGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAAC 596643
Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801
| |||||| ||| || | ||| | || | || || | || ||||| || |||
Sbjct 596644 GTGTTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCG 596703
Query 104802 ATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861
||| || || ||||| || ||||| ||| |||||||||| || || || | |
Sbjct 596704 ATGTTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAG-GT 596762
Query 104862 CTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920
| | | | | || | || | | ||| | |||||||| || | || |||||||||
Sbjct 596763 CGACAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACT 596822
Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTG-TAACCAAAAGAGTAATCAAAAGAATTT 104979
|||| || | |||||| ||||| ||| | || |||| |||||||| |||||||| |
Sbjct 596823 GGTAACCCTTTCATGCTCTACAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCT 596881
Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039
||| ||| || || |||||||| || || ||| | |||| | | |||||
Sbjct 596882 GGGCACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGA 596941
Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099
| || || || || | || || | ||||| ||| || || || | | | || |
Sbjct 596942 GGTCGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA-CTACA-ACCAG 596999
Query 105100 GAC--ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157
| | | ||| | | | || || ||||| || ||| | ||||| ||||| |||
Sbjct 597000 GGCGTCTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCAACCTGAAC 597059
Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217
| | |||||| || | ||||| ||| | || || || || ||| |||||
Sbjct 597060 AAGATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAACATGCGACAC 597119
Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGC 105276
||||| || || |||||||| || ||||| || |||| | ||| | || || ||
Sbjct 597120 CGTCCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTC--TAGCCCTCCGCATGC 597177
Query 105277 ATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
||| || || ||| || | | | |||| || || || |||||||| || || |
Sbjct 597178 CTTTCGAGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGACCATTTACCATG 597237
Query 105336 CCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393
|| ||||| | | || ||| | || ||| | || || || |||| ||
Sbjct 597238 GTGC-CTTGA-CAGCTTCCATGGAGATCGCCAAGGAGCAAGGACCCTACTCCACCTACGA 597295
Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---- 105449
||| || || | || || || | || |||| || |||| |||| || | |||
Sbjct 597296 GGGCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGT-GGAACGTCACCCCATCTG 597354
Query 105450 AGCTTCACTACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 105508
| ||| | |||||||| ||| ||||| || | |||||| |||| ||| | || |||
Sbjct 597355 ACCTT---TGGGACTGGGAGAGC-CTCAAAGAGCAGATCAAGCAGAATGGTGTCCGCAAC 597410
Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568
||||| | |||||||| ||||| || ||| || | || ||| |||| || || ||
Sbjct 597411 AGTCTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAACAACGAG 597470
Query 105569 TGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627
|| || || ||||| || | |||||||| ||| | | ||| || || |||||
Sbjct 597471 TGTTTCGAGCCCTATACATCCAACATCTACTCT-CGTCGTGTCCTAGCTGGCGAGTTCCA 597529
Query 105628 GATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687
| | |||||| || || | |||||| || || ||||| |||||| | | ||
Sbjct 597530 GGTGGTCAACCCCTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGACAACAT 597589
Query 105688 GAAGGATC---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATT 105730
|||| ||| ||| || ||| |||||||||||| || || |||
Sbjct 597590 GAAGAATCGTATCATTGCTGA----GGGTGGTTCCATCCAGAACATT 597632
Score = 113 bits (124), Expect = 5e-20
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855
|||||||| | || | |||| || || ||| ||||||||||||||| ||| |||
Sbjct 3731237 CCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCT 3731296
Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
|| | | || | |||||||||||||| ||||| ||||| || || |||||||||||
Sbjct 3731297 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACG 3731356
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|| | ||||| ||||||||||| || ||| || |||||
Sbjct 3731357 AGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGC 3731396
>seq7
Length=2827642
Score = 102 bits (112), Expect = 1e-16
Identities = 353/534 (66%), Gaps = 24/534 (4%)
Strand=Plus/Minus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
|||||| |||||||| ||||| ||| || | || | || || | |||||||||
Sbjct 316957 ACGATCGAAGCGACCAGGACGCGTGAGGGCCTTGTCCAACATCTCGGGGAAATTCGTCGC 316898
Query 9583 GGCGATGACAACAATACCTGTTTCATT-ATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
| || | || || | || | | || ||||||||| |||| ||| || | ||||| |
Sbjct 316897 ACCAATAATAATAACAT-TGCTGCTTTGATCAAAACCGTCCAGCTCAGTGAGTAGTTGAT 316839
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701
| | ||||| | ||| ||| || ||| | | | || | || | || |
Sbjct 316838 TCAGGGTTTGCT-----TCA-CATAAGC-GGCGTCGCGC--GCGTTACGGCGGCCACCAA 316788
Query 9702 CGGCATCAATCTCATCAATGAAGACGAT-GCATGGTTGATTTTCGCG-AGCGACTTCAAA 9759
|||||| | ||||||||||||| ||| ||| || || || | ||| | | ||
Sbjct 316787 TGGCATCCAATTCATCAATGAAGATGATAGCAGGG--GACTTGGACTTAGCAGCAGCGAA 316730
Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819
||||| || || ||||||||||| ||||| || | | ||| |||| || || |
Sbjct 316729 AAGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACCAG 316671
Query 9820 ACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878
|||| | || ||| |||||| || || || |||| || || |||||||| ||||| |
Sbjct 316670 ACATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTTTC 316611
Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAA 9936
| ||||| || ||| | |||||| | || |||| |||| | ||| || |||
Sbjct 316610 CGGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGAAA 316551
Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996
| |||| | | |||| | ||||| || || |||||| | || || || || | ||
Sbjct 316550 ATTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCATC 316493
Query 9997 AATCCCCTCAACATCGGTAAACCGGGTTTCAATTTCTTGTTCGGCATTGAACTC 10050
| ||| | |||||||| ||||| || | ||| ||||| || |||| |||
Sbjct 316492 ACACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260573986440
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