Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 277 2e-69 seq7 102 1e-16 >seq2 Length=5746313 Score = 277 bits (306), Expect = 2e-69 Identities = 1012/1547 (65%), Gaps = 57/1547 (4%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| | |||||| | ||| ||||||| || || | ||||| || || ||||| | Sbjct 596113 TGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCG 596172 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 104331 | || | ||||| ||| || |||||| |||| || |||| ||||| | || Sbjct 596173 AGAGGGTTATTGAGACTTACAACCTCATGTCCAGCAAG-TAC-TTCACACACGCCTCTCC 596230 Query 104332 AACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA 104391 || || ||||| |||||||| || | || |||| |||||||||| ||| || Sbjct 596231 TACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACAT 596290 Query 104392 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCA 104449 ||||| ||| || | ||||| |||| || || | | | | ||||| | ||||| Sbjct 596291 GAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAG-ACT-TGCGCCATGATCTCC 596348 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||| || ||||| || | ||||||| | | | || | ||| ||| Sbjct 596349 AAGATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATC 596408 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || || || ||| ||| |||||||| |||| ||||||||||| || ||| ||| Sbjct 596409 GCCGGTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACT 596468 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTT 104623 || || || || | |||| ||| | | ||| || || | || ||||||| Sbjct 596469 GCTCGATACGTCGACCAAGGTGG-CAAC--AAGCGACCTGGTGCCTTTGCTATCTATCTC 596525 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 ||||| |||||| | ||| || | |||||||| || | || ||||| ||| | || Sbjct 596526 GAGCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAA 596585 Query 104684 GAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 |||| |||| | |||||||| ||| || ||||||||||| |||||||||||||| Sbjct 596586 GAGGTCCGCGCT--CGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAAC 596643 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801 | |||||| ||| || | ||| | || | || || | || ||||| || ||| Sbjct 596644 GTGTTGAGAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCG 596703 Query 104802 ATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 ||| || || ||||| || ||||| ||| |||||||||| || || || | | Sbjct 596704 ATGTTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAG-GT 596762 Query 104862 CTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | | | | | || | || | | ||| | |||||||| || | || ||||||||| Sbjct 596763 CGACAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACT 596822 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTG-TAACCAAAAGAGTAATCAAAAGAATTT 104979 |||| || | |||||| ||||| ||| | || |||| |||||||| |||||||| | Sbjct 596823 GGTAACCCTTTCATGCTCTACAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCT 596881 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 ||| ||| || || |||||||| || || ||| | |||| | | ||||| Sbjct 596882 GGGCACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGA 596941 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 | || || || || | || || | ||||| ||| || || || | | | || | Sbjct 596942 GGTCGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA-CTACA-ACCAG 596999 Query 105100 GAC--ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | | | ||| | | | || || ||||| || ||| | ||||| ||||| ||| Sbjct 597000 GGCGTCTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCAACCTGAAC 597059 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | | |||||| || | ||||| ||| | || || || || ||| ||||| Sbjct 597060 AAGATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGCAACATGCGACAC 597119 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGC 105276 ||||| || || |||||||| || ||||| || |||| | ||| | || || || Sbjct 597120 CGTCCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTC--TAGCCCTCCGCATGC 597177 Query 105277 ATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 ||| || || ||| || | | | |||| || || || |||||||| || || | Sbjct 597178 CTTTCGAGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGACCATTTACCATG 597237 Query 105336 CCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 || ||||| | | || ||| | || ||| | || || || |||| || Sbjct 597238 GTGC-CTTGA-CAGCTTCCATGGAGATCGCCAAGGAGCAAGGACCCTACTCCACCTACGA 597295 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---- 105449 ||| || || | || || || | || |||| || |||| |||| || | ||| Sbjct 597296 GGGCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGT-GGAACGTCACCCCATCTG 597354 Query 105450 AGCTTCACTACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 105508 | ||| | |||||||| ||| ||||| || | |||||| |||| ||| | || ||| Sbjct 597355 ACCTT---TGGGACTGGGAGAGC-CTCAAAGAGCAGATCAAGCAGAATGGTGTCCGCAAC 597410 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 ||||| | |||||||| ||||| || ||| || | || ||| |||| || || || Sbjct 597411 AGTCTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAACAACGAG 597470 Query 105569 TGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627 || || || ||||| || | |||||||| ||| | | ||| || || ||||| Sbjct 597471 TGTTTCGAGCCCTATACATCCAACATCTACTCT-CGTCGTGTCCTAGCTGGCGAGTTCCA 597529 Query 105628 GATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 | | |||||| || || | |||||| || || ||||| |||||| | | || Sbjct 597530 GGTGGTCAACCCCTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGACAACAT 597589 Query 105688 GAAGGATC---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATT 105730 |||| ||| ||| || ||| |||||||||||| || || ||| Sbjct 597590 GAAGAATCGTATCATTGCTGA----GGGTGGTTCCATCCAGAACATT 597632 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||||| | || | |||| || || ||| ||||||||||||||| ||| ||| Sbjct 3731237 CCTTTGCTCAACGCTTGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCT 3731296 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | |||||||||||||| ||||| ||||| || || ||||||||||| Sbjct 3731297 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACG 3731356 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || | ||||| ||||||||||| || ||| || ||||| Sbjct 3731357 AGTTGATCTCGCGTGACGAGGGCCTACACACTGACTTTGC 3731396 >seq7 Length=2827642 Score = 102 bits (112), Expect = 1e-16 Identities = 353/534 (66%), Gaps = 24/534 (4%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 |||||| |||||||| ||||| ||| || | || | || || | ||||||||| Sbjct 316957 ACGATCGAAGCGACCAGGACGCGTGAGGGCCTTGTCCAACATCTCGGGGAAATTCGTCGC 316898 Query 9583 GGCGATGACAACAATACCTGTTTCATT-ATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 | || | || || | || | | || ||||||||| |||| ||| || | ||||| | Sbjct 316897 ACCAATAATAATAACAT-TGCTGCTTTGATCAAAACCGTCCAGCTCAGTGAGTAGTTGAT 316839 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | | ||||| | ||| ||| || ||| | | | || | || | || | Sbjct 316838 TCAGGGTTTGCT-----TCA-CATAAGC-GGCGTCGCGC--GCGTTACGGCGGCCACCAA 316788 Query 9702 CGGCATCAATCTCATCAATGAAGACGAT-GCATGGTTGATTTTCGCG-AGCGACTTCAAA 9759 |||||| | ||||||||||||| ||| ||| || || || | ||| | | || Sbjct 316787 TGGCATCCAATTCATCAATGAAGATGATAGCAGGG--GACTTGGACTTAGCAGCAGCGAA 316730 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || ||||||||||| ||||| || | | ||| |||| || || | Sbjct 316729 AAGATCTCGAACCCGCTTGGCGCCTACACCGACGTAGACCTCGTCAAA-TTCGCTACCAG 316671 Query 9820 ACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 |||| | || ||| |||||| || || || |||| || || |||||||| ||||| | Sbjct 316670 ACATGTAGAAGAACGGGACACCAGCCTCGCCAGCAACAGCCCGCGCGAGAAGTGTCTTTC 316611 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAA 9936 | ||||| || ||| | |||||| | || |||| |||| | ||| || ||| Sbjct 316610 CGGTACCGGGAGGACCAACCAGGAGGACGCCCTTAGGAAGCTTGCCTCCAAGCTGAGAAA 316551 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | |||| | | |||| | ||||| || || |||||| | || || || || | || Sbjct 316550 ATTTCTC-CGGATTGCGT-AGAAAGTCGACCATTTCTGTAAGCTCTTCCTTAGCCTCATC 316493 Query 9997 AATCCCCTCAACATCGGTAAACCGGGTTTCAATTTCTTGTTCGGCATTGAACTC 10050 | ||| | |||||||| ||||| || | ||| ||||| || |||| ||| Sbjct 316492 ACACCCATGCACATCGGTGAACCGAGTCT---TTTGCTGTTCAGCCTTGACCTC 316442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260573986440