Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 150 5e-31 seq9 96.9 1e-14 seq3 95.1 4e-14 >seq4 Length=3212107 Score = 150 bits (166), Expect = 5e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||| ||||| | ||||||||||| || || || || || Sbjct 2383657 CATACCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTC 2383598 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||||| ||||| || | || || || |||||||| | ||||| || ||||| Sbjct 2383597 ACTCAGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGG 2383538 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || |||||||| || ||| || || || ||||| | ||| |||| | Sbjct 2383537 AGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCAATAGTATCCGATGACT 2383479 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| ||||| || | ||||||||||| | || || ||||| || ||||| Sbjct 2383478 CAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 Score = 122 bits (134), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | ||||| || ||||| || || || || ||||| || || || Sbjct 2383882 ACCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCT 2383823 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || | || || ||||||||||| ||||| || ||||| || || Sbjct 2383822 CAAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGG 2383763 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688 ||| ||||| || ||||| || || ||| || || || ||||| | ||| || | |||| Sbjct 2383762 AATACCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCAATAGTATCCGACGACTCAA 2383704 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | |||||||| || | ||| || || || |||||||| Sbjct 2383703 CCTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 109 bits (120), Expect = 2e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || ||||| || || |||||||| || | Sbjct 2383433 TTTGCATACCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGT 2383374 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||| ||||| | || || || | Sbjct 2383373 AGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGT 2383314 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || || ||||| || | || ||||| || || | || || | Sbjct 2383313 CAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACG 2383254 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| |||| ||||| || || || || || || Sbjct 2383253 ACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211 >seq9 Length=2445292 Score = 96.9 bits (106), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| ||||||| ||| || || | | ||||| || ||||| || || Sbjct 519269 CGCGGCACACCAAGTGTAACGTTC---TTGGACGAGATACCAGTGAAATGGAAGGTGTTC 519213 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | ||| |||| ||||||||||| || || || || | ||||||||||||||| Sbjct 519212 AACGTCATTTGTGTAGCAGGCTCACCAATGGATTGTGCAGCTAGAACGCCAACCATTTCA 519153 Query 377578 CCAGGATTGACAAT 377591 ||||||||||| || Sbjct 519152 CCAGGATTGACCAT 519139 >seq3 Length=5106013 Score = 95.1 bits (104), Expect = 4e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || ||||| || || |||||||| || || || ||||| || || | || ||||| || Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | || || || || || | ||||| || || || || || || || Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022 Query 140730 ATCTGCA 140736 ||||||| Sbjct 1583023 ATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253798159893