Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq4 150 5e-31
seq9 96.9 1e-14
seq3 95.1 4e-14
>seq4
Length=3212107
Score = 150 bits (166), Expect = 5e-31
Identities = 174/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | |||||| ||||| | ||||||||||| || || || || ||
Sbjct 2383657 CATACCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTC 2383598
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | ||||| ||||| || | || || || |||||||| | ||||| || |||||
Sbjct 2383597 ACTCAGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGG 2383538
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || |||||||| || ||| || || || ||||| | ||| |||| |
Sbjct 2383537 AGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCAATAGTATCCGATGACT 2383479
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| ||||| || | ||||||||||| | || || ||||| || |||||
Sbjct 2383478 CAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Score = 122 bits (134), Expect = 3e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | | ||||| || ||||| || || || || ||||| || || ||
Sbjct 2383882 ACCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCT 2383823
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || | || || ||||||||||| ||||| || ||||| || ||
Sbjct 2383822 CAAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGG 2383763
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688
||| ||||| || ||||| || || ||| || || || ||||| | ||| || | ||||
Sbjct 2383762 AATACCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCAATAGTATCCGACGACTCAA 2383704
Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || | |||||||| || | ||| || || || ||||||||
Sbjct 2383703 CCTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Score = 109 bits (120), Expect = 2e-18
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || ||||| || ||||| || || |||||||| || |
Sbjct 2383433 TTTGCATACCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGT 2383374
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || ||||| ||||| | || || || |
Sbjct 2383373 AGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGT 2383314
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || || ||||| || | || ||||| || || | || || |
Sbjct 2383313 CAGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACG 2383254
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || ||||| |||| ||||| || || || || || ||
Sbjct 2383253 ACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211
>seq9
Length=2445292
Score = 96.9 bits (106), Expect = 1e-14
Identities = 102/134 (76%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| ||||||||| ||||||| ||| || || | | ||||| || ||||| || ||
Sbjct 519269 CGCGGCACACCAAGTGTAACGTTC---TTGGACGAGATACCAGTGAAATGGAAGGTGTTC 519213
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
| || | ||| |||| ||||||||||| || || || || | |||||||||||||||
Sbjct 519212 AACGTCATTTGTGTAGCAGGCTCACCAATGGATTGTGCAGCTAGAACGCCAACCATTTCA 519153
Query 377578 CCAGGATTGACAAT 377591
||||||||||| ||
Sbjct 519152 CCAGGATTGACCAT 519139
>seq3
Length=5106013
Score = 95.1 bits (104), Expect = 4e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| ||||| || || |||||||||||
Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| ||||| || || |||||||| || || || ||||| || || | || ||||| ||
Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | || || || || || | ||||| || || || || || || ||
Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022
Query 140730 ATCTGCA 140736
|||||||
Sbjct 1583023 ATCTGCA 1583029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253798159893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |