Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 288 1e-72
seq1 100 3e-16
>seq2
Length=5746313
Score = 288 bits (318), Expect = 1e-72
Identities = 535/783 (68%), Gaps = 12/783 (2%)
Strand=Plus/Plus
Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233
|||| || ||| || | ||||||| || || | |||||| || |||||| | |
Sbjct 596115 GAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCGAG 596174
Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293
| || |||||| ||| || | ||| | |||||||| || |||||| | || ||
Sbjct 596175 AGGGTTATTGAGACTTACAACCTCATGTCCAGCAAGTACTTCACACACGCCTCTCCTACT 596234
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|||||||||||||||||| || ||||| |||| |||||||| || | ||||||
Sbjct 596235 CTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAG 596294
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|||||| || || || || || || || |||||| || ||| ||||||||| |
Sbjct 596295 GATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 596354
Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGG 53471
| |||||||||||| || || || | ||| ||||||| |||| | ||| |
Sbjct 596355 GCCGGTGGTATCGGTCTCAACA--TCCACCGTATTCGTGCGACCGGCTCTTATATCGCCG 596412
Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531
| || ||||| || |||| || || || ||||| ||||| ||||||||||| || |
Sbjct 596413 GTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTC 596472
Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591
| |||||| |||| ||||| ||||| || | || || ||||| |||||||| |
Sbjct 596473 GATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCCT 596532
Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651
||||| |||| | | ||||| || || || || ||| || ||| | |||||| | |
Sbjct 596533 GGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTCC 596592
Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
|| || || || || || || |||||||| || ||||||||| || || ||||
Sbjct 596593 GCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGA 596652
Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771
|| ||| |||||| || |||||||| || |||||||| ||||| | ||| ||||
Sbjct 596653 AGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACG 596712
Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG----CTACAAGAAG 53827
| || ||||| | | | || || ||||| | ||||||| | ||||
Sbjct 596713 GCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA---- 596768
Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACG 53887
||| ||||||| | || | ||| |||| || || || |||| ||||| || |
Sbjct 596769 AAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTAAC 596828
Query 53888 CCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTC 53947
|| | |||| ||||||||| | |||| ||||| ||||| |||||| | ||| |
Sbjct 596829 CCTTTCATGCTCTACAAGGACCATGCCAACCGCAAGAGTAACCAAAAGAACCTGGGCACC 596888
Query 53948 ATC 53950
|||
Sbjct 596889 ATC 596891
Score = 134 bits (148), Expect = 2e-26
Identities = 337/502 (67%), Gaps = 25/502 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || || ||||| ||||| ||||||||||| ||| ||| ||||||||||||||
Sbjct 3731684 TATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTCCATG 3731625
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579
||||||| ||||| | || | ||| | |||||| || | | || | ||||
Sbjct 3731624 AAGTCGAAGGGGTTGGTGGCGCGGTACAC---CTTCTCGTTGCCGA---GAGCAAGGAGG 3731571
Query 74580 CGA---TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
|| ||||| ||||| | |||||| ||| |||| | | ||| || | ||
Sbjct 3731570 AGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGG 3731511
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAAT 74695
||| || || ||||| || | ||||| ||| | || ||| || || | ||
Sbjct 3731510 GCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTG-ATGAT 3731452
Query 74696 CTTGTGAA---TGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751
||| || | | || ||| |||| || | ||||||| ||| | ||| | || |
Sbjct 3731451 CTTCTGGACCTTCTCCTTGCTGGGGCGATTCT---TCAGGTGGGAGAACAGCAGGCAAG- 3731396
Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811
|||| || || ||| || || | ||||| || || || || | |||||||
Sbjct 3731395 CAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAG 3731336
Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871
|||| || ||||||||||| | ||| ||||||| ||||| ||| ||||||||||| |
Sbjct 3731335 GCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 3731276
Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAAGTCATCC 74928
| |||||| || |||||||| | |||||| || || | || | | | ||| ||||
Sbjct 3731275 CCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGTGATCC 3731216
Query 74929 AAGTCTGAGCCCATTCAGCTTT 74950
|||| | ||||| || || ||
Sbjct 3731215 AAGTAAGGGCCCACTCGGCCTT 3731194
Score = 84.2 bits (92), Expect = 2e-11
Identities = 202/303 (67%), Gaps = 7/303 (2%)
Strand=Plus/Minus
Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028
||| || ||||| | ||||||| || | || | ||| ||||||| | |||||||
Sbjct 3731125 AGTTTCAATCGCGTTGAAGAGGTATGTCCGCTGTGTGGGCTCCTTGATGTAGGTGTCAAT 3731066
Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGA 75088
| || ||||| ||||| || || || ||| | | |||| | ||||||| |
Sbjct 3731065 GAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 3731006
Query 75089 CCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACG 75146
|||||||| | |||||| || || | |||| || | | | ||||| |||||
Sbjct 3731005 TCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTC--GACCAAGTTCTCGTTGACG 3730948
Query 75147 ATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA 75206
|||||||| || ||||| || || || || | ||| |||| |||||| ||
Sbjct 3730947 ATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTATTTCTCATCCTCG 3730888
Query 75207 GTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263
||| | |||| ||| || | ||||||| | || |||||||| ||| | ||||||
Sbjct 3730887 TTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCAGTCCAG 3730828
Query 75264 AAA 75266
|||
Sbjct 3730827 AAA 3730825
>seq1
Length=5759619
Score = 100 bits (110), Expect = 3e-16
Identities = 193/285 (68%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
|||||||| | ||| || || || |||||||| || || | || || | ||| |
Sbjct 3987963 ATGTATCGAGCGCTAGCAGCGTCTGATCCACCTGCAAGACGAGACCCGAAATTTCCGCTG 3987904
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| | ||||| |||||||| || ||||||||||| |||| | ||||||
Sbjct 3987903 GGCTCCAAACAGTTGACGTTGTTGGATCCGACGAAATTCTGGGCCAGCCCGATAATCGTC 3987844
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||||| | |||||||||||| || || |||||||| | | ||| || ||||
Sbjct 3987843 TGTTGCAGGGACATTTCACCGTGGTGGTAAGCAGTCTGCTCAGACACGTAACCAGCCAGT 3987784
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| |||||| |||| | ||| ||| ||| |||||||| || ||||| || ||
Sbjct 3987783 TCAATGACCTTCTTGTCTTTGATCAAGTTGCGCTTCAGACAGGCATAGATCACTTTTCGT 3987724
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|| ||| |||| || || || || ||| || || ||| ||
Sbjct 3987723 TGACCTGGCTTCAGGCCATCGACAACTGAAGGGATTGATCGCATG 3987679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215787953800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |