Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 seq1 100 3e-16 >seq2 Length=5746313 Score = 288 bits (318), Expect = 1e-72 Identities = 535/783 (68%), Gaps = 12/783 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| || ||| || | ||||||| || || | |||||| || |||||| | | Sbjct 596115 GAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCGAG 596174 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 | || |||||| ||| || | ||| | |||||||| || |||||| | || || Sbjct 596175 AGGGTTATTGAGACTTACAACCTCATGTCCAGCAAGTACTTCACACACGCCTCTCCTACT 596234 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||||||||||||||| || ||||| |||| |||||||| || | |||||| Sbjct 596235 CTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAG 596294 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 |||||| || || || || || || || |||||| || ||| ||||||||| | Sbjct 596295 GATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 596354 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGG 53471 | |||||||||||| || || || | ||| ||||||| |||| | ||| | Sbjct 596355 GCCGGTGGTATCGGTCTCAACA--TCCACCGTATTCGTGCGACCGGCTCTTATATCGCCG 596412 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || ||||| || |||| || || || ||||| ||||| ||||||||||| || | Sbjct 596413 GTACCAACGGTACATCCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTC 596472 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | |||||| |||| ||||| ||||| || | || || ||||| |||||||| | Sbjct 596473 GATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCCT 596532 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| |||| | | ||||| || || || || ||| || ||| | |||||| | | Sbjct 596533 GGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTCC 596592 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 || || || || || || || |||||||| || ||||||||| || || |||| Sbjct 596593 GCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGA 596652 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771 || ||| |||||| || |||||||| || |||||||| ||||| | ||| |||| Sbjct 596653 AGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACG 596712 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG----CTACAAGAAG 53827 | || ||||| | | | || || ||||| | ||||||| | |||| Sbjct 596713 GCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA---- 596768 Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACG 53887 ||| ||||||| | || | ||| |||| || || || |||| ||||| || | Sbjct 596769 AAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTAAC 596828 Query 53888 CCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTC 53947 || | |||| ||||||||| | |||| ||||| ||||| |||||| | ||| | Sbjct 596829 CCTTTCATGCTCTACAAGGACCATGCCAACCGCAAGAGTAACCAAAAGAACCTGGGCACC 596888 Query 53948 ATC 53950 ||| Sbjct 596889 ATC 596891 Score = 134 bits (148), Expect = 2e-26 Identities = 337/502 (67%), Gaps = 25/502 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| ||||| ||||||||||| ||| ||| |||||||||||||| Sbjct 3731684 TATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTCCATG 3731625 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 ||||||| ||||| | || | ||| | |||||| || | | || | |||| Sbjct 3731624 AAGTCGAAGGGGTTGGTGGCGCGGTACAC---CTTCTCGTTGCCGA---GAGCAAGGAGG 3731571 Query 74580 CGA---TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 || ||||| ||||| | |||||| ||| |||| | | ||| || | || Sbjct 3731570 AGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGG 3731511 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAAT 74695 ||| || || ||||| || | ||||| ||| | || ||| || || | || Sbjct 3731510 GCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGCATCAGTG-ATGAT 3731452 Query 74696 CTTGTGAA---TGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751 ||| || | | || ||| |||| || | ||||||| ||| | ||| | || | Sbjct 3731451 CTTCTGGACCTTCTCCTTGCTGGGGCGATTCT---TCAGGTGGGAGAACAGCAGGCAAG- 3731396 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| || || ||| || || | ||||| || || || || | ||||||| Sbjct 3731395 CAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAG 3731336 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || ||||||||||| | ||| ||||||| ||||| ||| ||||||||||| | Sbjct 3731335 GCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 3731276 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAAGTCATCC 74928 | |||||| || |||||||| | |||||| || || | || | | | ||| |||| Sbjct 3731275 CCTCGACAGCAGCGAAGGCGACCAAGCGTTGAGCAAAGGTTGACTCCTTGTCAGTGATCC 3731216 Query 74929 AAGTCTGAGCCCATTCAGCTTT 74950 |||| | ||||| || || || Sbjct 3731215 AAGTAAGGGCCCACTCGGCCTT 3731194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 202/303 (67%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028 ||| || ||||| | ||||||| || | || | ||| ||||||| | ||||||| Sbjct 3731125 AGTTTCAATCGCGTTGAAGAGGTATGTCCGCTGTGTGGGCTCCTTGATGTAGGTGTCAAT 3731066 Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGA 75088 | || ||||| ||||| || || || ||| | | |||| | ||||||| | Sbjct 3731065 GAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 3731006 Query 75089 CCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACG 75146 |||||||| | |||||| || || | |||| || | | | ||||| ||||| Sbjct 3731005 TCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTC--GACCAAGTTCTCGTTGACG 3730948 Query 75147 ATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA 75206 |||||||| || ||||| || || || || | ||| |||| |||||| || Sbjct 3730947 ATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTATTTCTCATCCTCG 3730888 Query 75207 GTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263 ||| | |||| ||| || | ||||||| | || |||||||| ||| | |||||| Sbjct 3730887 TTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCTTCGGCAGTCCAG 3730828 Query 75264 AAA 75266 ||| Sbjct 3730827 AAA 3730825 >seq1 Length=5759619 Score = 100 bits (110), Expect = 3e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 |||||||| | ||| || || || |||||||| || || | || || | ||| | Sbjct 3987963 ATGTATCGAGCGCTAGCAGCGTCTGATCCACCTGCAAGACGAGACCCGAAATTTCCGCTG 3987904 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| | ||||| |||||||| || ||||||||||| |||| | |||||| Sbjct 3987903 GGCTCCAAACAGTTGACGTTGTTGGATCCGACGAAATTCTGGGCCAGCCCGATAATCGTC 3987844 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||||| | |||||||||||| || || |||||||| | | ||| || |||| Sbjct 3987843 TGTTGCAGGGACATTTCACCGTGGTGGTAAGCAGTCTGCTCAGACACGTAACCAGCCAGT 3987784 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | |||||| |||| | ||| ||| ||| |||||||| || ||||| || || Sbjct 3987783 TCAATGACCTTCTTGTCTTTGATCAAGTTGCGCTTCAGACAGGCATAGATCACTTTTCGT 3987724 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || ||| |||| || || || || ||| || || ||| || Sbjct 3987723 TGACCTGGCTTCAGGCCATCGACAACTGAAGGGATTGATCGCATG 3987679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215787953800