Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 >seq1 Length=5759619 Score = 152 bits (168), Expect = 4e-32 Identities = 261/376 (69%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||||||| || || ||||| ||||| ||| |||||||| |||| || | ||| Sbjct 2010270 GTGGCACGGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGAT 2010211 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30201 ||||| ||| | ||| | ||| | || ||| | | |||||| || || || Sbjct 2010210 GCGCCGGTCGTACGGGCTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCC 2010151 Query 30202 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30261 | |||| |||||| | | | |||| |||| | || ||||| |||| ||||||||| Sbjct 2010150 CTGGCCCGCGTAGTCGGTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAA 2010091 Query 30262 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAA 30320 |||||||||||| |||||||| ||| | ||| ||| | | ||||| | |||||| | Sbjct 2010090 CCCGTACACCGGGCCCAGGTCCCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGA 2010032 Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380 | || | || |||||| ||||||||||||| ||||| ||| |||| | || Sbjct 2010031 ACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACG 2009972 Query 30381 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30440 ||| || |||||||||||||||||| |||| || ||| | || |||| || Sbjct 2009971 ACGTGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCT 2009912 Query 30441 TGGTCGTGAGGAGGGG 30456 |||| || || || || Sbjct 2009911 TGGTGGTCAGCAGCGG 2009896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 ||||||| | | ||||| | ||||| || |||| ||| ||| ||||| ||||| Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489 Query 29912 CCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| ||| Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 || || | |||||| |||||||| || || ||||| ||||||||||| | | ||| Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTGCGCTG 2010370 Query 30031 GTAGAGCTGACA 30042 ||| ||||| || Sbjct 2010369 GTACAGCTGGCA 2010358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310246490852