Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 seq8 93.3 3e-14 >seq4 Length=3212107 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || || |||| |||||||| Sbjct 2383108 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGC 2383049 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || |||||||||||||| ||||| | ||||||||||| |||| || Sbjct 2383048 TTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATC-TT 2382990 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | ||| || || | || || || || ||||| Sbjct 2382989 GGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2382930 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || ||||||||| Sbjct 2382929 GAGGGTCTTCACGAAGATCTGCATG 2382905 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||||||||| |||||||||||||| || || || || || || Sbjct 2383416 AGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGT 2383357 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || || ||||||||||| ||||| | |||||| Sbjct 2383356 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCC 2383297 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 2383296 TTGTCTTGAATCTT 2383283 >seq8 Length=2477967 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||||| ||||||||||| || ||||| || || || || || || Sbjct 2273365 AGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2273306 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || || ||||||||||| ||||| | || ||| Sbjct 2273305 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCC 2273246 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 2273245 TTGTCCTGGATCTT 2273232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729481091223