Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 9e-22
>seq4
Length=3212107
Score = 118 bits (130), Expect = 9e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || || |||||| | ||||| ||||| || || |||||||| | || ||
Sbjct 2383211 GTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCGAC 2383270
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| || ||||||||||| || ||||| || || || |||||||| || ||
Sbjct 2383271 AATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGATC 2383330
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| ||| || || || |||| || | ||| | ||||| |||||||||||||||||
Sbjct 2383331 TTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGGAA 2383390
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || | || | || ||||| |||| ||||| ||
Sbjct 2383391 TCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGTAT 2383428
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || || || || ||||||||| | || ||||| || || || | |
Sbjct 2382904 CCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCT 2382963
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
||||| | || || | || || || || || ||||| || ||||| || || || |
Sbjct 2382964 CCGACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 2383023
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
|||||||||| || | |||||||| ||| | || ||| | ||| | || || ||||
Sbjct 2383024 AACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACA 2383083
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || |||||| ||| | || | || | ||| | || || |||||
Sbjct 2383084 ACATCCAGAAGGAGAGCACCCTCCACCTCGTCCTCCGTCTACGTGGAGGCAT 2383135
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||| || ||| | || || || || || || ||||
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || || || ||||| ||||| || || || ||||||
Sbjct 2383715 GATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAA 2383774
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || ||||| || ||||| || | ||| | ||| ||||||
Sbjct 2383775 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAAC 2383834
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| ||||| || || | || ||||| | ||| | || || ||
Sbjct 2383835 ATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGG 2383881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918231469120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |