Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 >seq1 Length=5759619 Score = 194 bits (214), Expect = 2e-44 Identities = 448/673 (67%), Gaps = 64/673 (10%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||||||||| || || || |||| | | || ||||| | |||||||||||||||| Sbjct 2009896 CCGCTGCTGACCACCAAGCGGGTGTTCCTGCGGGCGGTGGTGGCGGAGCTGCTGTGGTTC 2009955 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCT-CGTCCCGGGGGGTGAAGATCTGGGACGC 34341 ||| ||| |||| | || |||| || | |||| | ||||||||||||| Sbjct 2009956 GTGGCGGGCAACACGTCGTCGCTGGCGCTCAGCGAGGCCGGGG-TCAAGATCTGGGACGG 2010014 Query 34342 TCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTC--CCATCTCGGGAGGAGGGCGA 34398 ||||||| || || || ||||||| ||| |||| | ||| | ||| || ||| || Sbjct 2010015 CAACGGGTCGCGCGAGTTCCTGGACA-GCGTGGGGCTGGGCCACC--GGGCGGTGGGGGA 2010071 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | |||||||||| ||||||||||||||| | ||||| ||||||| ||| || || ||| Sbjct 2010072 CCTGGGCCCGGTGTACGGGTTCCAGTGGCGGCACTTCGGGGCGGCGTA-CGTGGACGCGG 2010130 Query 34459 AG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | ||||| |||| ||||| | ||||||||| | ||| | ||| || | Sbjct 2010131 CGACCGACTACGCGGGCCAGGGCGTCGACCAGCTGGCCGAGGTGGTGCACAAGCTGCGGA 2010190 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 || ||| | ||| | | |||||| || |||||||||||||| ||| || || Sbjct 2010191 CGAGCCCGTACGACCGGCGCATCGTGCTGAGCGCGTGGAACCCGGCGGACCTGGGCAAGA 2010250 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT--------CGC--------- 34620 ||||||| || |||||||||| || || |||||||| ||| Sbjct 2010251 TGGCGCTGCCGCCGTGCCACATGTTCGCGCAGTTCTACGTGTCGTACCCGCGGGGAGCGG 2010310 Query 34621 -------------------------------GAATGGGGAGCTGTCCTGCCAGCTCTATC 34649 ||| || | ||| ||||||||| || | Sbjct 2010311 CGACGGGGGCGGCGACGACGACGACCAAGCAGAAGGGCCACCTGCACTGCCAGCTGTACC 2010370 Query 34650 AACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCA 34709 | || | ||||||||| | ||||||||||||||||| || || ||||| ||||| | Sbjct 2010371 AGCGCAGCTGCGACATGGGGCTGGGGGTGCCGTTCAACATCGCGAGCTACGCGCTGCTGA 2010430 Query 34710 CGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGGTGCATACGT--TGG 34766 || ||||| | || || | | || | |||| || |||||| ||| || |||| ||| Sbjct 2010431 CGCACATGGTGGCGCACGCGGCGGAGCTGGTGCC-GGGGAGCCTGACGC--ACGTCATGG 2010487 Query 34767 GGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGC 34826 | || ||||| | ||| | ||||| ||||| ||| ||| | |||||| || |||| Sbjct 2010488 GCGACGCGCACGTGTACGCGGACCACGTCGAGGCGCTGCGGGTGCAGCTGGCGCGGGAGC 2010547 Query 34827 CCCGACCGTTCCC 34839 | || |||||||| Sbjct 2010548 CGCGGCCGTTCCC 2010560 Score = 194 bits (214), Expect = 2e-44 Identities = 448/673 (67%), Gaps = 64/673 (10%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || ||||| || |||||| | ||| ||| ||||| ||||| | ||| Sbjct 2010560 GGGAACGGCCGCGGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTAC 2010501 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACGACATGA 6622 | ||||| || |||| |||| || ||| |||||| || |||| | || | | || Sbjct 2010500 ACGTGCGCGTCGCCCATGACGT--GCGTCAGGCTCCCC-GGCACCAGCTCCGCCGCGTGC 2010444 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 || | ||||| ||| ||||| ||||| || || ||||||||||||||||| | ||||||| Sbjct 2010443 GCCACCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATG 2010384 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTC------------------ 6724 || | || || || ||||||||| ||| | || ||| Sbjct 2010383 TCGCAGCTGCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTCGTCGTCGTC 2010324 Query 6725 ----------------------GCG--------ACGTAGAATTGGCAGAGGGTGTGGCAC 6754 ||| |||||||| || || |||||||| Sbjct 2010323 GCCGCCCCCGTCGCCGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAACATGTGGCAC 2010264 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || ||||||||| || ||| |||||||||||||| || |||||| | | | Sbjct 2010263 GGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGATGCGCCGG 2010204 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCC 6874 || | ||| || | || ||| | ||| | ||||||||| | ||||| ||| Sbjct 2010203 TCGTACGGGCTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCCCTGGCCC 2010144 Query 6875 GAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| | | ||| || || ||| ||||||| ||||| | ||||||||||||||| Sbjct 2010143 GCGTAGTCGGTCGCCGCGTCCACG-TACGCCGCCCCGAAGTGCCGCCACTGGAACCCGTA 2010085 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG--GAACCCC-CGCTTGTCCAGAAAGTC 6990 |||||||||| ||| ||| || ||| | ||| | |||| ||| ||||||| || || Sbjct 2010084 CACCGGGCCCAGGTCCCCCACCGCCC--GGTGGCCCAGCCCCACGC-TGTCCAGGAACTC 2010028 Query 6991 TCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG-AGAGCTCCTTGGTGTTCG 7049 || ||||||| ||||||||||||| | |||| | || |||| || | || Sbjct 2010027 GCGCGACCCGTTGCCGTCCCAGATCTTGA-CCCCGGCCTCGCTGAGCGCCAGCGACGACG 2009969 Query 7050 TGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCG 7109 || ||| ||||||||||||||||||| | ||||| || | | |||| || || | Sbjct 2009968 TGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCTTGG 2009909 Query 7110 TCGTCAGCAGCGG 7122 | ||||||||||| Sbjct 2009908 TGGTCAGCAGCGG 2009896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262226298320