Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4 167 5e-36
seq8 163 7e-35
seq3 161 2e-34
seq2 86.0 1e-11
>seq4
Length=3212107
Score = 167 bits (184), Expect = 5e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| ||||| || ||| ||| || |||||||| || |||| ||
Sbjct 2383130 TCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAG 2383071
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || || || || |||||||| || ||||| | || ||||||||||| || |
Sbjct 2383070 GGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGAT 2383011
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| |||||||| ||||| ||||| ||| || |||||
Sbjct 2383010 GCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTC 2382951
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||| ||||| || ||||| ||||| || || | ||||||
Sbjct 2382950 GAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2382906
Score = 156 bits (172), Expect = 1e-32
Identities = 164/213 (77%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|| || |||||||| || || || || || ||||| || || | ||||| | | |||||
Sbjct 2383866 AGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGG-TACGGCCATC 2383808
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|||| ||||||||| || |||||||| || ||||| || || |||| |||||||||||
Sbjct 2383807 CTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTC 2383748
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||||||||| || ||||| || || || || || ||||||||||| ||||||||
Sbjct 2383747 CTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGT 2383688
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||| | ||||| || || | ||||||
Sbjct 2383687 CTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Score = 154 bits (170), Expect = 3e-32
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| |||||||| || ||||| ||||| || || | ||||| | ||||||
Sbjct 2383410 AGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCC 2383351
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| | || ||||||||||| || | || ||||||||
Sbjct 2383350 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 2383291
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||||||||| || || ||||| || || || |||
Sbjct 2383290 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTC 2383231
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 2383230 TTGCCAGTGAGGGTCTTGAC 2383211
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| || | ||| || || || | || |||||||| |||||||| || || || ||
Sbjct 2383648 ACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGT 2383589
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||| ||||||||| || ||||| | ||||||||||||||||||| ||
Sbjct 2383588 TCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACC 2383529
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || ||||| || || || || || |||||||| ||
Sbjct 2383528 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAG 2383469
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || | |||||| ||||| | |||||
Sbjct 2383468 CGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
>seq8
Length=2477967
Score = 163 bits (180), Expect = 7e-35
Identities = 171/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| ||||| || ||| ||| || |||||||| || || | ||
Sbjct 2273372 TCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAG 2273313
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || || || ||||||||||| |||||||| | ||| |||||||| || || |
Sbjct 2273312 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGAT 2273253
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||||||||||||||| || || || ||||||||||| || || |||||
Sbjct 2273252 GCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTC 2273193
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| |||||||| ||||| || || | ||||||
Sbjct 2273192 AAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148
>seq3
Length=5106013
Score = 161 bits (178), Expect = 2e-34
Identities = 148/187 (79%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | ||||| || ||||||||||| || |||||
Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|||||||||||||| ||||||| || ||||||||||||||||| || || || |||
Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|||||||| || || |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022
Query 211107 ACCTGCA 211113
| |||||
Sbjct 1583023 ATCTGCA 1583029
>seq2
Length=5746313
Score = 86.0 bits (94), Expect = 1e-11
Identities = 190/281 (68%), Gaps = 12/281 (4%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCAT---CTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||| ||||| | | |||||| | ||||| ||||| || | ||
Sbjct 596879 GTTCTTTTGGTTACTCTTGCGGT---TGGCATGGTCCTTGTAGAGCATGAAAGGGTTACC 596823
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTT- 178208
||| | || ||| | ||||| || ||| |||| |||||| || ||||||
Sbjct 596822 AGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGA---TCTTTTG 596766
Query 178209 TGG--CTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGAC 178266
| | || || || ||||||||| | |||||| ||||||| || || || ||
Sbjct 596765 TCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAAC 596706
Query 178267 ATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCAC 178326
||| | || || || |||||||||||| | || |||||| |||| | || ||
Sbjct 596705 ATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAAC 596646
Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|||||||||||||| || | |||||| |||| |||||
Sbjct 596645 ACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAA 596605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151539599315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |