Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 167 5e-36 seq8 163 7e-35 seq3 161 2e-34 seq2 86.0 1e-11 >seq4 Length=3212107 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || ||| ||| || |||||||| || |||| || Sbjct 2383130 TCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAG 2383071 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || || |||||||| || ||||| | || ||||||||||| || | Sbjct 2383070 GGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGAT 2383011 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| |||||||| ||||| ||||| ||| || ||||| Sbjct 2383010 GCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTC 2382951 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || ||||| ||||| || || | |||||| Sbjct 2382950 GAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2382906 Score = 156 bits (172), Expect = 1e-32 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || |||||||| || || || || || ||||| || || | ||||| | | ||||| Sbjct 2383866 AGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGG-TACGGCCATC 2383808 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| ||||||||| || |||||||| || ||||| || || |||| ||||||||||| Sbjct 2383807 CTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTC 2383748 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || ||||| || || || || || ||||||||||| |||||||| Sbjct 2383747 CTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGT 2383688 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| | ||||| || || | |||||| Sbjct 2383687 CTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| |||||||| || ||||| ||||| || || | ||||| | |||||| Sbjct 2383410 AGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCC 2383351 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || ||||||||||| || | || |||||||| Sbjct 2383350 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 2383291 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || || ||||| || || || ||| Sbjct 2383290 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTC 2383231 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 2383230 TTGCCAGTGAGGGTCTTGAC 2383211 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || || || | || |||||||| |||||||| || || || || Sbjct 2383648 ACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGT 2383589 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||||||| || ||||| | ||||||||||||||||||| || Sbjct 2383588 TCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACC 2383529 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || || || || || |||||||| || Sbjct 2383528 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAG 2383469 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | |||||| ||||| | ||||| Sbjct 2383468 CGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 >seq8 Length=2477967 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || ||| ||| || |||||||| || || | || Sbjct 2273372 TCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAG 2273313 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || ||||||||||| |||||||| | ||| |||||||| || || | Sbjct 2273312 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGAT 2273253 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||||||||| || || || ||||||||||| || || ||||| Sbjct 2273252 GCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTC 2273193 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 2273192 AAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2273148 >seq3 Length=5106013 Score = 161 bits (178), Expect = 2e-34 Identities = 148/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| || ||||| Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 |||||||||||||| ||||||| || ||||||||||||||||| || || || ||| Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| || || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022 Query 211107 ACCTGCA 211113 | ||||| Sbjct 1583023 ATCTGCA 1583029 >seq2 Length=5746313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCAT---CTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||| ||||| | | |||||| | ||||| ||||| || | || Sbjct 596879 GTTCTTTTGGTTACTCTTGCGGT---TGGCATGGTCCTTGTAGAGCATGAAAGGGTTACC 596823 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTT- 178208 ||| | || ||| | ||||| || ||| |||| |||||| || |||||| Sbjct 596822 AGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGA---TCTTTTG 596766 Query 178209 TGG--CTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGAC 178266 | | || || || ||||||||| | |||||| ||||||| || || || || Sbjct 596765 TCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAAC 596706 Query 178267 ATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCAC 178326 ||| | || || || |||||||||||| | || |||||| |||| | || || Sbjct 596705 ATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTCTCAAC 596646 Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 |||||||||||||| || | |||||| |||| ||||| Sbjct 596645 ACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAA 596605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151539599315