Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 9e-21
seq8 98.7 7e-16
>seq4
Length=3212107
Score = 114 bits (126), Expect = 9e-21
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | |||||||| |||||||| ||||| ||||| || ||
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||| | | || || || ||||| |||||| | || || ||||||
Sbjct 2383715 GATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAA 2383774
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| ||||| || |||| || | || || || |||| ||||||
Sbjct 2383775 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAAC 2383834
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || || || || |||
Sbjct 2383835 ATTCAGAAGGAATCAACA 2383852
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || || ||||||||||| || || ||| |
Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || || || ||||| || || | ||||| || |||
Sbjct 2382966 GACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAA 2383025
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || ||||||||||| ||||| || |||| ||||| | || ||||||
Sbjct 2383026 CAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACAAC 2383085
Query 23791 ATACAAAAAGAG 23802
|| || || |||
Sbjct 2383086 ATCCAGAAGGAG 2383097
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || | || ||||| || ||||| || || ||||| || ||
Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||| | | || || ||| ||||| || ||| | || || || |||
Sbjct 2383487 GATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAA 2383546
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || ||||||||||| || |||| || | || ||| | | || ||||||
Sbjct 2383547 CAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTACAAC 2383606
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || |||||||| || || ||| | ||| || | |||| || ||
Sbjct 2383607 ATCCAGAAAGAGTCTACCTTGCATCTGGTTCTACGTCTGCGTGGTGG 2383653
>seq8
Length=2477967
Score = 98.7 bits (108), Expect = 7e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| || || || || || |
Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| ||||| | ||||| || ||
Sbjct 2273208 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCA 2273266
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || |||||||| || || || |||| ||||| | ||| |||||
Sbjct 2273267 ACAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 2273326
Query 23790 CATACAAAAAGAG 23802
||| || || |||
Sbjct 2273327 CATCCAGAAGGAG 2273339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009472295748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |