Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq6 84.2 2e-11 >seq1 Length=5759619 Score = 123 bits (136), Expect = 2e-23 Identities = 418/660 (63%), Gaps = 62/660 (9%) Strand=Plus/Minus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||||| | | ||||| | || ||||| || |||||||| ||| ||||| || || Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| ||| Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCC--CTGACCTC 29800 || || | |||||| |||||||| || |||||||| ||||||||||| | ||| | | Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTG--CGC 2010372 Query 29801 TGGTAGAGCTG-----GCACGAGAGC--TCT------------------------CCGTC 29829 ||||| ||||| ||| | | | ||| ||||| Sbjct 2010371 TGGTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTCGTCGTCGTCGCCGCCCCCGTC 2010312 Query 29830 GCT-----------------CACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGG 29869 || |||||| ||||| ||||| |||||||| || || Sbjct 2010311 GCCGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAACATG---TGGCACGGCGGCAGC 2010255 Query 29870 GCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGG 29929 ||||| |||| ||| |||||||| || | || | |||||||| ||| | ||| Sbjct 2010254 GCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGATGCGCCGGTCGTACGGG 2010195 Query 29930 TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 29989 | ||| | || ||| | | |||||| || || ||| |||| |||||| Sbjct 2010194 CTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCCCTGGCCCGCGTAGTCG 2010135 Query 29990 GNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30049 | |||| |||| ||||||||||||||||||||| ||| Sbjct 2010134 GTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAACCCGTACACCGGGCCC 2010075 Query 30050 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTT 30108 ||||| ||| | ||| ||| | | ||||| | |||||| || || | || ||||| Sbjct 2010074 AGGTCCCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGAACTCGCGCGACCCGTT 2010016 Query 30109 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30168 | ||||||||||||| ||||| |||| |||| | || ||| || || Sbjct 2010015 GCCGTCCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACGACGTGTTGCCCGCCAC 2009956 Query 30169 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 |||||||||||||||| |||| || ||| | || |||| |||||| || || || || Sbjct 2009955 GAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCTTGGTGGTCAGCAGCGG 2009896 >seq6 Length=2893484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551 |||||||||| || | | ||| ||| ||| |||| |||||||||||||| || | Sbjct 2808651 TCGTCAAGGTACGGGTTCGCACCACCAAAATCCCGCAGATTGGCGACAAGTTTGCCTCTC 2808710 Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGAC-TCAGGAGGACATGCCCTTCGA 53610 |||||| || ||||| ||| ||| | | | | |||||| |||||||||||| | Sbjct 2808711 GTCACGGA-CAGAAGGGAACAATCGGTGTCA-CGTATCGTCAGGAAGACATGCCCTTC-A 2808767 Query 53611 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669 | | || || || || ||||| | ||||||||||| |||||| ||||||| | |||| Sbjct 2808768 CGCGTGAGGGTGTAGTCCCCGATATTATCATCAACCCGCACGCCATTCCCTCACGTATGA 2808827 Query 53670 C 53670 | Sbjct 2808828 C 2808828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163046546466