Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 2e-23
seq6 84.2 2e-11
>seq1
Length=5759619
Score = 123 bits (136), Expect = 2e-23
Identities = 418/660 (63%), Gaps = 62/660 (9%)
Strand=Plus/Minus
Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683
||||||| | | ||||| | || ||||| || |||||||| ||| ||||| || ||
Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489
Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742
|||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| |||
Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430
Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCC--CTGACCTC 29800
|| || | |||||| |||||||| || |||||||| ||||||||||| | ||| | |
Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTG--CGC 2010372
Query 29801 TGGTAGAGCTG-----GCACGAGAGC--TCT------------------------CCGTC 29829
||||| ||||| ||| | | | ||| |||||
Sbjct 2010371 TGGTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTCGTCGTCGTCGCCGCCCCCGTC 2010312
Query 29830 GCT-----------------CACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGG 29869
|| |||||| ||||| ||||| |||||||| || ||
Sbjct 2010311 GCCGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAACATG---TGGCACGGCGGCAGC 2010255
Query 29870 GCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGG 29929
||||| |||| ||| |||||||| || | || | |||||||| ||| | |||
Sbjct 2010254 GCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGATGCGCCGGTCGTACGGG 2010195
Query 29930 TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 29989
| ||| | || ||| | | |||||| || || ||| |||| ||||||
Sbjct 2010194 CTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCCCTGGCCCGCGTAGTCG 2010135
Query 29990 GNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30049
| |||| |||| ||||||||||||||||||||| |||
Sbjct 2010134 GTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAACCCGTACACCGGGCCC 2010075
Query 30050 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTT 30108
||||| ||| | ||| ||| | | ||||| | |||||| || || | || |||||
Sbjct 2010074 AGGTCCCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGAACTCGCGCGACCCGTT 2010016
Query 30109 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30168
| ||||||||||||| ||||| |||| |||| | || ||| || ||
Sbjct 2010015 GCCGTCCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACGACGTGTTGCCCGCCAC 2009956
Query 30169 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
|||||||||||||||| |||| || ||| | || |||| |||||| || || || ||
Sbjct 2009955 GAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCTTGGTGGTCAGCAGCGG 2009896
>seq6
Length=2893484
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/181 (73%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551
|||||||||| || | | ||| ||| ||| |||| |||||||||||||| || |
Sbjct 2808651 TCGTCAAGGTACGGGTTCGCACCACCAAAATCCCGCAGATTGGCGACAAGTTTGCCTCTC 2808710
Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGAC-TCAGGAGGACATGCCCTTCGA 53610
|||||| || ||||| ||| ||| | | | | |||||| |||||||||||| |
Sbjct 2808711 GTCACGGA-CAGAAGGGAACAATCGGTGTCA-CGTATCGTCAGGAAGACATGCCCTTC-A 2808767
Query 53611 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669
| | || || || || ||||| | ||||||||||| |||||| ||||||| | ||||
Sbjct 2808768 CGCGTGAGGGTGTAGTCCCCGATATTATCATCAACCCGCACGCCATTCCCTCACGTATGA 2808827
Query 53670 C 53670
|
Sbjct 2808828 C 2808828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406163046546466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |