Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 5e-31
>seq1
Length=5759619
Score = 149 bits (164), Expect = 5e-31
Identities = 260/376 (69%), Gaps = 2/376 (1%)
Strand=Plus/Minus
Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407
||||||||| || || ||||| ||||| ||| |||||||| |||| || | |||
Sbjct 2010270 GTGGCACGGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGAT 2010211
Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467
||||| ||| | ||| | ||| | || ||| | | |||||| || || ||
Sbjct 2010210 GCGCCGGTCGTACGGGCTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCC 2010151
Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527
| |||| |||||| | | |||| |||| | || ||||| |||| ||| |||||
Sbjct 2010150 CTGGCCCGCGTAGTCGGTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAA 2010091
Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAA 27586
|||||||||||| |||||||| ||| | ||| ||| | | ||||| | |||||| |
Sbjct 2010090 CCCGTACACCGGGCCCAGGTCCCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGA 2010032
Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646
| || | || |||||| ||||||||||||| ||||| |||| |||| | ||
Sbjct 2010031 ACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACG 2009972
Query 27647 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 27706
||| || |||||||||||||||||| |||| || ||| | || |||| ||
Sbjct 2009971 ACGTGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCT 2009912
Query 27707 TGGTCGTGAGGAGGGG 27722
|||| || || || ||
Sbjct 2009911 TGGTGGTCAGCAGCGG 2009896
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177
||||||| | | ||||| | ||||| || ||||| ||| ||| ||||| |||||
Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489
Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236
|||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| |||
Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430
Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296
|| || | |||||| |||||||| || || ||||| ||||||||||| | | |||
Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTGCGCTG 2010370
Query 27297 GTAGAGCTGACA 27308
||| ||||| ||
Sbjct 2010369 GTACAGCTGGCA 2010358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507060395561
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |