Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 149 5e-31 >seq1 Length=5759619 Score = 149 bits (164), Expect = 5e-31 Identities = 260/376 (69%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 ||||||||| || || ||||| ||||| ||| |||||||| |||| || | ||| Sbjct 2010270 GTGGCACGGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACGAT 2010211 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 ||||| ||| | ||| | ||| | || ||| | | |||||| || || || Sbjct 2010210 GCGCCGGTCGTACGGGCTCGTCCGCAGCTTGTGCACCACCTCGGCCAGCTGGTCGACGCC 2010151 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 | |||| |||||| | | |||| |||| | || ||||| |||| ||| ||||| Sbjct 2010150 CTGGCCCGCGTAGTCGGTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACTGGAA 2010091 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAA 27586 |||||||||||| |||||||| ||| | ||| ||| | | ||||| | |||||| | Sbjct 2010090 CCCGTACACCGGGCCCAGGTCCCCCACCGCCCGGTGGCCCA-GCCCCACGCTGTCCAGGA 2010032 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646 | || | || |||||| ||||||||||||| ||||| |||| |||| | || Sbjct 2010031 ACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACCCCGGCCTCGCTGAGCGCCAGCGACG 2009972 Query 27647 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 27706 ||| || |||||||||||||||||| |||| || ||| | || |||| || Sbjct 2009971 ACGTGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACACCCGCT 2009912 Query 27707 TGGTCGTGAGGAGGGG 27722 |||| || || || || Sbjct 2009911 TGGTGGTCAGCAGCGG 2009896 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||||| | | ||||| | ||||| || ||||| ||| ||| ||||| ||||| Sbjct 2010548 GGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACGTGGTCCGCGTACACGTGCGCGTCG 2010489 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| | ||| | || ||| ||||| | ||| | | |||| |||| ||||| ||| Sbjct 2010488 CCCATGACGTGCGTCAGGCTC-CCCGGCACCAGCTCCGCCGCGTGCGCCACCATGTGCGT 2010430 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 || || | |||||| |||||||| || || ||||| ||||||||||| | | ||| Sbjct 2010429 CAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCCAGCCCCATGTCGCAGCTGCGCTG 2010370 Query 27297 GTAGAGCTGACA 27308 ||| ||||| || Sbjct 2010369 GTACAGCTGGCA 2010358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507060395561