Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8 165 6e-36 seq4 154 1e-32 seq3 118 8e-22 >seq8 Length=2477967 Score = 165 bits (182), Expect = 6e-36 Identities = 177/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || ||||| || ||||||||||| ||||||||||| |||| | Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| ||||| |||||||| ||||| || || | || Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | |||||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 2273197 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 2273196 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 2273145 >seq4 Length=3212107 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||||||||||| ||||||||||| || | ||| ||| |||| || Sbjct 2383114 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCA 2383055 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| |||||||||||||||||||| || || | || | || ||||| ||| Sbjct 2383054 AGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2382995 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||||| ||| || ||||| | || || ||||| Sbjct 2382994 ATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 2382935 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||||||||| |||||| Sbjct 2382934 CCGGTGAGGGTCTTCACGAAGATCTGCATG 2382905 Score = 118 bits (130), Expect = 8e-22 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || || ||||| || ||| |||||||| |||||||| Sbjct 2383432 TTGCATACCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTA 2383373 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || | || ||||||||||| || || |||||||| ||||| || || Sbjct 2383372 GTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTC 2383313 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | || ||||| || |||||| ||| || ||| | |||||||||| Sbjct 2383312 AGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGT--CGATGGTGTCGGAC 2383255 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| | ||||| ||||| || ||||||||||| |||| Sbjct 2383254 GACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 ||||||||||| || ||||| || |||||||| ||| | || | || | || || Sbjct 2383863 ACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGC-CATCCTC 2383805 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | |||||| ||||| | || | ||||||||| ||| Sbjct 2383804 CAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTG 2383745 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || || || | || || ||||| | || |||||||| Sbjct 2383744 GATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTT 2383685 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | ||||| |||||||| ||||| Sbjct 2383684 TCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCA 44203 ||| || ||||||||||| || ||||| | || | || |||| |||||| |||||| Sbjct 2383618 CTCTTTCTGGATGTTGTAGTCACTCAGAGTTCG-GC-CATCCTCCAACTGCTTGCCGGCA 2383561 Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 |||||||| || || || || | ||| | ||| ||||| ||| ||||| ||| | Sbjct 2383560 AAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACG 2383501 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 | | || || || | || || ||||| | ||| || |||||||| || | ||||| Sbjct 2383500 TTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTG 2383441 Query 44324 ACGAAGATTTGCAT 44337 || ||||||||||| Sbjct 2383440 ACAAAGATTTGCAT 2383427 >seq3 Length=5106013 Score = 118 bits (130), Expect = 8e-22 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || || | || || |||||||| || ||||||| Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| || || || || | ||| | || ||||| ||| ||||| ||| || ||| Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| || |||||||| | || || ||||| ||||||||||||||||| Sbjct 1582961 --CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 1583018 Query 44326 GAAGATTTGCA 44336 |||||| |||| Sbjct 1583019 GAAGATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990263991127