Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq8 165 6e-36
seq4 154 1e-32
seq3 118 8e-22
>seq8
Length=2477967
Score = 165 bits (182), Expect = 6e-36
Identities = 177/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || || ||||| || ||||||||||| ||||||||||| |||| |
Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| || |||||||| ||||| |||||||| ||||| || || | ||
Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| |||||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 2273197
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||| | || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 2273196 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 2273145
>seq4
Length=3212107
Score = 154 bits (170), Expect = 1e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||||||||||| ||||||||||| || | ||| ||| |||| ||
Sbjct 2383114 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCA 2383055
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| |||||||||||||||||||| || || | || | || ||||| |||
Sbjct 2383054 AGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2382995
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||||| ||| || ||||| | || || |||||
Sbjct 2382994 ATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 2382935
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| |||||||||||||||||||| ||||||
Sbjct 2382934 CCGGTGAGGGTCTTCACGAAGATCTGCATG 2382905
Score = 118 bits (130), Expect = 8e-22
Identities = 163/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || || ||||| || ||| |||||||| ||||||||
Sbjct 2383432 TTGCATACCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTA 2383373
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| ||| || | || ||||||||||| || || |||||||| ||||| || ||
Sbjct 2383372 GTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTC 2383313
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| || | || ||||| || |||||| ||| || ||| | ||||||||||
Sbjct 2383312 AGGCGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGT--CGATGGTGTCGGAC 2383255
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
|| || ||||| | ||||| ||||| || ||||||||||| ||||
Sbjct 2383254 GACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
||||||||||| || ||||| || |||||||| ||| | || | || | || ||
Sbjct 2383863 ACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGC-CATCCTC 2383805
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || |||||||| | |||||| ||||| | || | ||||||||| |||
Sbjct 2383804 CAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTG 2383745
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | || || || | || || ||||| | || ||||||||
Sbjct 2383744 GATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTT 2383685
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| | ||||| |||||||| |||||
Sbjct 2383684 TCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCA 44203
||| || ||||||||||| || ||||| | || | || |||| |||||| ||||||
Sbjct 2383618 CTCTTTCTGGATGTTGTAGTCACTCAGAGTTCG-GC-CATCCTCCAACTGCTTGCCGGCA 2383561
Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263
|||||||| || || || || | ||| | ||| ||||| ||| ||||| ||| |
Sbjct 2383560 AAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACG 2383501
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323
| | || || || | || || ||||| | ||| || |||||||| || | |||||
Sbjct 2383500 TTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTG 2383441
Query 44324 ACGAAGATTTGCAT 44337
|| |||||||||||
Sbjct 2383440 ACAAAGATTTGCAT 2383427
>seq3
Length=5106013
Score = 118 bits (130), Expect = 8e-22
Identities = 142/191 (74%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| || || | || || |||||||| || |||||||
Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| || || || || | ||| | || ||||| ||| ||||| ||| || |||
Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||||| || |||||||| | || || ||||| |||||||||||||||||
Sbjct 1582961 --CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 1583018
Query 44326 GAAGATTTGCA 44336
|||||| ||||
Sbjct 1583019 GAAGATCTGCA 1583029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990263991127
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |