Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq8 132 1e-25 seq3 131 4e-25 >seq4 Length=3212107 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || || ||||| ||||| || || |||||||||| Sbjct 2383209 TCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCG 2383268 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| |||||||| ||||| || || ||||| || ||||| || ||| | | Sbjct 2383269 ACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGA 2383328 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || |||||| | || || |||| || ||| | ||||| | Sbjct 2383329 TCTTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAAAGG 2383388 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || ||||| Sbjct 2383389 AATCCACTCTCCACCTTGT 2383407 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || ||||| || ||||| || ||||| || || || Sbjct 2383430 CAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCGGAT 2383489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || ||||| ||||| ||| Sbjct 2383490 ACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAA 2383549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| || ||| | || ||||| | ||||| || || ||| || Sbjct 2383550 CGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTACAACATC 2383609 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || ||||||| ||| Sbjct 2383610 CAGAAAGAGTCTACCTTGCATCTGGTT 2383636 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| ||||||||||||||||| || || || Sbjct 2383658 CAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCGGAT 2383717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| ||||| || || ||||| || || Sbjct 2383718 ACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAACAG 2383777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||| | || ||||| | || |||| ||| || ||| | Sbjct 2383778 CGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTAC-CTTGAGCGACTACAACAT 2383836 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||||||||| || || ||| Sbjct 2383837 TCAGAAGGAATCAACACTTCACCTGGTT 2383864 >seq8 Length=2477967 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 2273151 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 2273210 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||| || ||||| || Sbjct 2273211 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAACAG 2273270 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 2273271 CGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 2273330 Query 178104 CAAAAAGA 178111 || || || Sbjct 2273331 CAGAAGGA 2273338 >seq3 Length=5106013 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||||||||||||||| || ||| Sbjct 1583027 CAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGAC 1582968 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| ||||| ||| Sbjct 1582967 ACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAACAA 1582908 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || |||| || ||| || Sbjct 1582907 CGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATC 1582848 Query 178104 CAAAA 178108 || || Sbjct 1582847 CAGAA 1582843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730721893014